An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level. - BioAnalyticResource/eFP-Seq_Browser
5and this new RNA-seq data set on ripening-stage receptacle. With a combined total of 46 different tissues, each with two biological replicates (46×2=92 RNA-seq libraries), this eFP browser for wild strawberry enables
and is widely used in other model organisms including Arabidopsis and mouse.Here we applied eFP to display wild strawberry RNA sequencing(RNA-seq)data from 42 different tissues and stages,including various flower and fruit developmental stages.In addition,we generated eight additional RNA-seq data ...
Horticulture Research (2017) An eFP browser for visualizing strawberry RNA-seq data C Hawkins et al. Interpretation of strawberry eFP images The eFP is hosted at the Strawberry Genome Resource server http://bioinformatics.towson.edu/strawberry/.13 It can be directly accessed from http://mb3....
The eFP-Seq Browser will retrieve the number of reads mapped and display these above the desired Araport 11 gene model. You can sort or filter the columns.", "devDependencies": { "concurrently": "^8.2.2", "cross-env": "^7.0.3", "http-server": "^14.1.1", "nodemon": "^3.1....
近日,来自加拿大多伦多大学的研究人员在Plant Journal发表了标题为“An “eFP‐Seq Browser” for Visualizing and Exploring RNA‐Seq Data”的文章,推出了一款功能更为强大的eFP‐Seq Browser工具。 该网站显示了每个样本中感兴趣基因的图谱覆盖率以及“电子荧光图像”(eFP)。同时还总结了每个RNA-seq实验的细节,提供...
An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data Improvements in next-generation sequencing technologies have resulted in dramatically reduced sequencing costs. This has led to an explosion of '-seq'-base... A Sullivan,PK Purohit,NH Freese,... - 《Plant Journal for Cell...
eFP-Seq浏览器是一种RNA-Seq数据探索工具,可显示感兴趣的基因的阅读图谱以及“电子荧光象形”(eFP)图像。 如果随SAM / BAM(及其索引文件)一起提供,此网络工具还可以生成新的数据集,以可视化任何RNA-Seq映射覆盖范围。 基因表达水平和相似性还通过计算其不同剪接变体之间的每千碱基对读数/百万个读图映射(RPKM)表达...
Tool is at https://bar.utoronto.ca/eFP-Seq_Browser/; RNA-seq data at https://s3.amazonaws.com/iplant-cdn/iplant/home/araport/rnaseq_bam/ and https://s3.amazonaws.com/iplant-cdn/iplant/home/araport/rnaseq_bam/Klepikova/. Code is available at https://github.com/BioAnalytic...
Links to the Integrated Genome Browser desktop visualization tool allow researchers to visualize and explore the details of RNA‐seq alignments summarized in eFP‐Seq Browser as coverage graphs. We present four cases of use of the eFP‐Seq Browser for ABI3, SR34, SR45a and U2AF65B, where ...