A gene’s ID (geneXXXXX) must be used in query the Strawberry eFP Browser. This gene ID is a standard identifier forF. vescagenes. For example, the transcription factorFveMYB10has the gene ID ‘gene31413’. An easy way to retrieve the gene ID is to search the Plaza database (http:...
The electronic fluorescent pictograph (eFP) software is a useful and popular tool to display transcriptome data visually, and is widely used in other model organisms including Arabidopsis and mouse. Here we applied eFP to display wild strawberry RNA sequencing (RNA-seq) data from 42 different ...
(eFP)software is a useful and popular tool to display transcriptome data visually,and is widely used in other model organisms including Arabidopsis and mouse.Here we applied eFP to display wild strawberry RNA sequencing(RNA-seq)data from 42 different tissues and stages,including various flower and...
An "Electronic Fluorescent Pictograph" Browser for Exploring and Analyzing Large-Scale Biological Data Sets We give examples of using the tool to present Arabidopsis gene expression data from the AtGenExpress Consortium (Arabidopsis eFP Browser), data for ... W Debbie,V Ben,N Hardeep,... - ...
"description": "Search among 113 RNA-seq data sets used by Araport 11 to reannotate the Arabidopsis genome (Cheng et al. 2016, http://biorxiv.org/content/early/2016/04/05/047308). The eFP-Seq Browser will retrieve the number of reads mapped and display these above the desired Arapo...
bioinformaticsrna-seqdatabasedata-visualizationwebappalternative-splicingbamarabidopsisefprna-seq-mappingarabidopsis-thaliana UpdatedSep 26, 2024 HTML A simple demo showcasing how you can integrate EFP ethereumsocial-graphefpdecentralized-social-networksethereumfollowprotocol ...
Arabidopsis eFP Browser 1、通过拟南芥TAIR官网搜索gene后(具体操作见前面的链接),可以直接链接到eFP Browser获得基因的表达谱⬇。 2、点开链接后如下,默认是发育过程的表达图谱,我倾向于把它划分成几个不同发育模块。 发育过程中的表达谱图 3. 除了发育过程,也可以选择其他不同条件下的表达模式(1的位置),比如...
A section of the Arabidopsis eFP Browser Biotic Stress output.Debbie WinterBen VinegarHardeep NahalRon AmmarGreg V. WilsonNicholas J. Provart
An exemplary Arabidopsis Cell eFP Browser output image.Debbie, WinterBen, VinegarHardeep, NahalRon, AmmarGreg, V. WilsonNicholas, J. Provart
Arabidopsis thalianaRNA processingRNA-seqdata visualizationplant growthtemperature stressImprovements in next-generation sequencing technologies have resulted in dramatically reduced sequencing costs. This has led to an explosion of '-seq'-based methods, of which RNA sequencing (RNA-seq) for generating ...