BioAnalyticResource/eFP-Seq_Browser Star12 An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level. bioinformaticsrna-seqdatabasedata-visualizationwebappalternative-splicing...
track back: Arabidopsis eFP Browser. http://bar.utoronto.ca/efp. Nakagawa T, Kurose T, Hino T, Tanaka K, Kawamukai M, Niwa Y, Toyooka K, Matsuoka K, Jinbo T, Kimura T: Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for pl...
BAR Arabidopsis eFP browser database for extracting microarray transcript expression data (https://bar.utoronto.ca/efp/cgi-bin/efpWeb.cgi; [94]) was mined for developmental and abiotic stress transcriptional changes. Absolute values, which are the raw values provided by BAR, were log2 ...
Our data correspond to those on AtRanBPM expression found in the publically available Affymetrix expression databases, the Arabidopsis eFP browser [32], and the Genevestigator database [33] where AtRanBPM has a constant level of expression in analysed tissues as well as during seedling development....
Among them, to confirm the results obtained from the soybean eFP Browser, we further investigated the expression patterns of GmMYB108 in soybean tissues or organs at different developmental stages using qRT-PCR of RNA samples from the shoots, leaves, and roots at VC stage; mature leaves and ...
Cell eFP Browser\n3.9.3 P3DB: Plant Protein Phosphorylation Database\n3.9.4 Plant PTM Viewer\n3.10 Protein-Protein Interaction Networks\n3.10.1 Arabidopsis Interactions Viewer 2 (AIV2)\n3.11 Integrated Tools\n3.11.1 VirtualPlant\n3.11.2 GeneMania\n3.11.3 ePlant\n3.11.4 TF2Network\n3.12 Tar...
Locus: Description (TAIR) Gene expression level (Arabidopsis eFP Browser) Relative level (Fold-change) Absolute level Candidate genes selected from the QTL interval (SCT4) on chromosome 3: 9942057 to 10995480 nt. 1. AT3G27230: S-adenosyl-L-methionine-dependent methyltransferases superfamily ...
Public database (eFP browser; http:// bbc.botany.utoronto.ca/efp/cgi-bin/efpWeb.cgi) showed that these NAC TFs have different expression profiles under various senescence-promoting conditions: e.g., the expression of ORS1 and ANAC046 is upregulated in the dark, whereas that of ORE1 is ...
Data were extracted from the Arabidopsis eFP browser. A) ethylene-related genes, B) auxin-related genes, C) AGPs and HRGPs, D) peroxidases, E) 10 most up regulated genes, F) 10 most down regulated genes. Additional file 4: Enriched Gene Ontology (GO) terms in the differentially ...
Public database (eFP browser;http://bbc.botany.utoronto.ca/efp/cgi-bin/efpWeb.cgi) showed that these NAC TFs have different expression profiles under various senescence-promoting conditions: e.g., the expression ofORS1andANAC046is upregulated in the dark, whereas that ofORE1is only slightly...