该工具可以通过 SRR 号从 NCBI 的 SRA 数据库中下载 SRA 文件。但是,使用这种方法下载速度会有所限制,并且需要额外的步骤将 SRA 文件转化为 FASTQ 文件。此外,该过程中还会消耗大量时间和计算资源。因此,我们选用Aspera软件,从EBI(European Bioinformatics Institute)的ENA(European Nucleotide Archive)数据库直接下载FAS...
EBI Metagenomics portal Submitting metagenomics data to the European Nucleotide ArchiveH Denise
ENA数据库:European Nucleotide Archive:隶属EBI (European Bioinformatics Institute),功能等同SRA,并且对保存的数据做了注释,界面相对于SRA更友好,对于有数据需求的研究人员来说,ENA数据库最诱人的点应该是可以直接下载fastq (.gz)文件,由 EBI 负责维护。 两者在主要功能方面非常类似,同时数据互通。 sra文件下载方式 ...
ENAbrowser: "The European Nucleotide Archive (ENA) captures and presents information relating to experimental workflows that are based around nucleotide sequencing. A typical workflow includes the isolation and preparation of material for sequencing, a run of a sequencing machine in which sequencing data...
The EBI resources of the European Nucleotide Archive (in particular Sequence Read Archive and EMBL-Bank), UniProt, InterPro, Ensembl Genomes and IntAct are all used for analysis by metagenomic researchers, but not in an integrated manner. We intend to provide a user friendly interface to these ...
To update the transcripts to the calculated longest strong TSS, we used an automated process that identified CAGE clusters overlapping the first exons of transcripts or those within 500 nucleotides of the first nucleotide. Alternatively, we updated them manually when the genes required additional ...
ENA数据库:European Nucleotide Archive:隶属EBI (European Bioinformatics Institute),功能等同SRA,并且对保存的数据做了注释,界面相对于SRA更友好,对于有数据需求的研究人员来说,ENA数据库最诱人的点应该是可以直接下载fastq (.gz)文件,由 EBI 负责维护。
ENA数据库:European Nucleotide Archive:隶属EBI (European Bioinformatics Institute),功能等同SRA,并且对保存的数据做了注释,界面相对于SRA更友好,对于有数据需求的研究人员来说,ENA数据库最诱人的点应该是可以直接下载fastq (.gz)文件,由 EBI 负责维护。
EBI Metagenomics resource Quick tourC AmidG Cochrane