2 is when covraiance matrix (covariance of predictors with the the traget variable) is being passed. By default, the package will run for raw data (data_format=0). This parameter is not needed in case of
424a6dc File tree test.py 1 file changed +2 -0 lines changed +2 Original file line numberDiff line numberDiff line change @@ -1,3 +1,5 @@ 1+ #Test the package 2+ 13 fromdominance_analysis.dominanceimport* 24 35 deftest_package_function(): ...
In particular, F-FOD produces full pairwise comparison matrices, allows for partial orderings and rankings of the statistical units to be derived from the input data, is computationally sufficiently light to be applied in most cases of practical interest and is freely available in the R package ...
We used the check_model function of the ‘performance’ package in R to assess the normality of residuals via the visual inspection of the Q-Q plots and the distribution curve. We found that both the linearity and the distribution of residuals fit to the assumptions of normality. Then we ...
The over- representation of GO terms and KEGG pathways of DEGs were identified using the Goatools (https://github.com/ tanghaibao/Goatools) and R GO package [50] respectively. The P-value of the enriched analyses was corrected by the FDR method. Real-time PCR To verify the expression ...
The network-based diffusion analyses reported in this paper can be carried out using the NBDA package for R available at:https://github.com/whoppitt/NBDA/. R scripts to obtain all values reported in both this paper and the Supplementary Information are provided in theSupplementary Software. ...
Differentially expressed genes between F1 hybrids and the parental lines were identified using the DESeq R package (1.10.1)47 with an adjusted P-value < 0.05 (Benjamini-Hochberg [BH] multiple test correction). Gene expression models, including additivity, expression-level dominance (ELD),...
For DEA analysis, the software R and its Benchmarking package was used. The Benchmarking package contains most of the basic DEA models, and the code for executing the matrix calculation necessary for the dominance value derivation was included. For network visualization, we used the igraph ...
Biden had begun restoring that fuel backup — though it still has less oil in it than when his administration began — and Republicans have eyed sales from the reserve to help pay for their sweeping budget reconciliation package. U.S. oil and gas o...
R package StageWise was developed to go beyond the capabilities of most specialized software for genomic prediction, without requiring the programming skills needed for more general-purpose software for mixed models. As the name suggests, one of the core features is a fully efficient, two-stage ...