Changing the amino acid sequence also changes the interactions and the final 3D structure. Utilizing our DNA Translation tool can help to ensure that cells will produce the expected amino acid sequence from your nucleotide sequence. Figure 4. Consequences of a frameshift mutation....
Synsor: a tool for alignment-free detection of engineered DNA sequencesdoi:10.3389/fbioe.2024.1375626Tay, Aidan P.Didi, KieranWickramarachchi, AnuradhaBauer, Denis C.Wilson, Laurence O. W.Maselko, MaciejFrontiers in Bioengineering & Biotechnology...
We present a performance per watt analysis of CUDAlign 4.0, a parallel strategy to obtain the optimal pairwise alignment of huge DNA sequences in multi-GPU platforms using the exact Smith-Waterman method. Our study includes acceleration factors, performa
Genomic sequence similarity comparison is a crucial research area in bioinformatics. Multiple Sequence Alignment (MSA) is the basic technique used to identify regions of similarity between sequences, although MSA tools are widely used and highly accurate, they are often limited by computational complexit...
Sequence symmetry as a tool for designing DNA nanostructures. Angew. Chem. Int. Ed. 44, 6694–6696 (2005). Article CAS Google Scholar Rothemund, P. W., Papadakis, N. & Winfree, E. Algorithmic self-assembly of DNA Sierpinski triangles. PLoS Biol. 2, e424 (2004). Article Google ...
Extract ITS and Neighboring Regions from Eukaryotic DNA Sequences dna-barcodebioinformatics-tool UpdatedJun 24, 2024 R Landrylab/Evans-Yamamoto_et_al_2021 Star2 Code Issues Pull requests Jupyter notebooks for BFG-PCA related simulation and analysis. ...
2) The stand-alone Reverse Complement tool In the main DNA Baser window go to Tasks menu and click the 'Reverse Complement Tool'. The Reverse Complement Tool will open in a new window Enter the DNA sequence you want to reverse in the top panel and press the main button ...
Proteins in each initial cluster were aligned using MAFFT92 and HMM profiles were constructed using HMMER40 based on the results of multiple sequence alignment. Subsequently, the similarity between each protein of the initial clustering and the HMM profile was quantified using Hmmscan40 with e value...
Alterations to the reference DNA sequence are assigned to different DNA DSB repair pathways: ±1 bp insertions/deletions = non-homologous end joining (NHEJ), deletions with microhomologies (MH-del), i.e., ≥ 2 bp = alternative end joining (alt-EJ), integration of double-...
Sequence symmetry as a tool for designing DNA nanostructures. Angew. Chem. Int. Ed. 44, 6694–6696 (2005). Article CAS Google Scholar Download references Acknowledgements The authors thank G. Rizis, A. Godelitsas, A. Greschner and I. Athanasiadou for critically reading the manuscript. K...