Molecule Conformation Prediction Molecular Dynamics Simulations Proteins Protein Structure Prediction Protein Design Antibody Design Complex Complex Structure Prediction Materials Materials Design Physics Papers Small Molecules Drug Design Structure-based Drug Design with Equivariant Diffusion Models Arne Schneuing1,...
Two groups of models were constructed using molecular dynamics simulation software to simulate the diffusion behaviour of the aforementioned seven types of small gas molecules in oil and paper. The diffusion coefficients, displacement features, free volume characteristics and interaction energies of the ...
015 (2023-08-28) DiffSmooth Certifiably Robust Learning via Diffusion Models and Local Smoothing arxiv.org/pdf/2308.1433 016 (2023-08-28) Voice Conversion with Denoising Diffusion Probabilistic GAN Models arxiv.org/pdf/2308.1431 017 (2023-08-26) Empowering Dynamics-aware Text-to-Video Diffusion ...
Denoising diffusion models embody a type of generative artificial intelligence that can be applied in computer vision, natural language processing and bioinformatics. In this Review, we introduce the key concepts and theoretical foundations of three diffusion modelling frameworks (denoising diffusion probabili...
molecular dynamics, enabling PMDM to consider the conditioned protein information to generate molecules efficiently. The comprehensive experiments indicate that PMDM outperforms baseline models across multiple evaluation metrics. To evaluate the applications of PMDM under real drug design scenarios, we ...
Foundation Models for Music: A Survey Yinghao Ma, Anders Øland, Anton Ragni, Bleiz MacSen Del Sette, Charalampos Saitis, Chris Donahue, Chenghua Lin, Christos Plachouras, Emmanouil Benetos, Elona Shatri, Fabio Morreale, Ge Zhang, György Fazekas, Gus Xia, Huan Zhang, Ilaria Manco, ...
The learnable functionφthat models the dynamics of the diffusion model takes as input a noisy version of the linkerztat timetand the contextu. These two parts are modelled as a single fully connected graph where nodes are represented by coordinatesrand feature vectorshthat include atom types, ...
Molecular and Material Generation Theory Applications Resources Introductory Posts The Annotated Diffusion Model Niels Rogge, Kashif Rasul [Website] 06 Jun 2022 The recent rise of diffusion-based models Maciej Domagała [Website] 06 Jun 2022 Introduction to Diffusion Models for Machine Learnin...
Two- and N-step correlated models for the analysis of molecular dynamics trajectories of linear molecules in silicalite. Recent molecular dynamics data on the diffusion of linear diatomic and triatomic molecules in the zeolite silicalite are analyzed in terms of a new correla... Demontis,Pierfranco...
Computational methods have been extensively used to understand the underlying dynamics of molecular communication methods employed by nature. One very effective and popular approach is to utilize a Monte Carlo simulation. Although it is very reliable, this method can have a very high computational cost...