Molecular and Material Generation Theory Applications Resources Introductory Posts The Annotated Diffusion Model Niels Rogge, Kashif Rasul [Website] 06 Jun 2022 The recent rise of diffusion-based models Maciej Domagała [Website] 06 Jun 2022 Introduction to Diffusion Models for Machine Learnin...
DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design machine-learningdrug-designequivariancediffusion-modelsfragment-based-drug-discoverymolecular-linker UpdatedApr 17, 2024 Python Jupyter Dock is a set of Jupyter Notebooks for performing molecular docking protocols interactively, ...
Diffusion models of protein structure; trigonometry and attention are all you need! proteins transformer protein diffusion diffusion-models protein-structure-generation Updated Dec 12, 2023 Jupyter Notebook HannesStark / EquiBind Star 479 Code Issues Pull requests EquiBind: geometric deep learning ...
DiffMD: A Geometric Diffusion Model for Molecular Dynamics Simulations. Fang Wu, Stan Z. Li. Preprint, April 2022. [arxiv] Fragment-Based Ligand Generation Guided By Geometric Deep Learning On Protein-Ligand Structure. Alexander S. Powers, Helen H. Yu, Patricia Suriana, Ron O. Dror. Preprint...
Dynamics-Informed Protein Design with Structure Conditioning Simon V. Mathis, Urszula Julia Komorowska, Mateja Jamnik, Pietro Lió WCBICML2023/ICLR 2024 ForceGen: End-to-end de novo protein generation based on nonlinear mechanical unfolding responses using a protein language diffusion model Bo Ni and...
Implementation of GeoDiff: a Geometric Diffusion Model for Molecular Conformation Generation (ICLR 2022). moleculecomputational-biologycomputational-chemistryconformationiclrgenerative-modelsgraph-neural-networksdiffusion-modelsscore-matchingiclr2022 UpdatedMay 17, 2023 ...
Improving Diffusion-Based Image Synthesis with Context Prediction 3.2. Data with Invariant Structures GeoDiff: A Geometric Diffusion Model for Molecular Conformation Generation Permutation invariant graph generation via score-based generative modeling Score-based Generative Modeling of Graphs via the System of...
generative-modelimage-generationtext-to-imageicmldiffusion-modelsstable-diffusionmultidiffusion UpdatedSep 21, 2023 Jupyter Notebook YyzHarry/imbalanced-regression Star806 [ICML 2021, Long Talk] Delving into Deep Imbalanced Regression natural-language-processingcomputer-visionregressionhealthcareimbalanced-dataicml...
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics[github][paper] Like the earlier Enformer, this is a transformer model for nucleotides (DNA or RNA), but with different design and goals. Whereas Enformer is a pre-trained model for mammalian genomes (human and mouse...
salrodgom / lammps_RASPA_interface Star 5 Code Issues Pull requests nanopore interface monte-carlo molecular-dynamics adsorption diffusion Updated May 16, 2017 Fortran dejac001 / adsorption_isotherm_fitting Star 2 Code Issues Pull requests Fit temperature-dependent isotherms to equilibrium data....