De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolutionComputational modelsMachine learningRNA sequencingTranscriptomicsUncovering the tissue molecular architecture at single-cell res
2010. De novo assembly and analysis of RNA-seq data. Nature Methods 7, 909-912(2010) Program requirements for transabyss and transabyss-merge: ABySS 2.0.x Python 2.7.x or Python 3.6.x python-igraph 0.7.x BLAT Required Python packages (ie. python-igraph) can be installed easily with pip...
www.nature.com/scientificdata OPEN Data Descriptor Received: 28 March 2019 Accepted: 17 July 2019 Published: xx xx xxxx RNA-Seq analysis and de novo transcriptome assembly of Cry toxin susceptible and tolerant Achaea janata larvae Narender K. Dhania1, Vinod K. Chauhan1, R. K....
Trinity: reconstructing a full-length transcriptome without a genome from RNA-Seq data. Nat Biotechnol. 2011;29:644–52. Article CAS Google Scholar Robertson G, Schein J, Chiu R, Corbett R, Field M, Jackman SD, et al. De novo assembly and analysis of RNA-seq data. Nat Methods. 2010...
大刍草苗期转录组RNA—Seq数据的denovo拼接 肖之夏 郑用琏 华中农业大学作物遗传改良国家重点实验室,武汉430070 摘要 采用solexa测序技术,对大刍草苗期全株各组织转录组进行了RNA-Seq测序、de; '10"00拼接和信息 比对研究。结果表明:转录组测序共得到了46.4GB的原始数据,归并整理后获得长76bp的序列有 ...
www.nature.com/scientificdata OPEN Data Descriptor Received: 28 March 2019 Accepted: 17 July 2019 Published: xx xx xxxx RNA-Seq analysis and de novo transcriptome assembly of Cry toxin susceptible and tolerant Achaea janata larvae Narender K. Dhania1, Vinod K. Chauhan1, R. K....
出处 《华中农业大学学报》 CAS CSCD 北大核心 2014年第2期15-21,共7页 Journal of Huazhong Agricultural University 基金 国家"863"计划项目(2012AA10307) 关键词 大刍草 转录组 RNA-SEQ DE novo拼接 teosinte transcriptome RNA-Seq de novo assembly 分类号 S519.24 [农业科学—作物学] 登录...
对于miRBase 20中新收入的miRNA,目前尚无数据库收录其靶基因信息,对于这类miRNA,我司整合miRanda与TargetScan算法的优点,为客户提供De Novo靶点预测分析服务。 • miRNA 与靶序列结合的 2D 简图,特别重要的互补区域以彩色标识出 • 结合点周围的 AU 含量,AU 越多,该区域越容易打开,利于 AGO-miRNA 复合物结合...
大刍草苗期转录组RNA—Seq数据的denovo拼接
RNA denovo RNA de novo 应用及分析报告 作者：李娜娜 部门：技术支持部日期：2014-05-16 g y G e n n e r g y G e n e r G e n e r g y G e n e r g y G e n e r g y G e n e r g y G e G e n e r g y G e n e r g y G e n e G e n...