A literature-based, manually-curated database of PCR primers for the detection of antibiotic resistance genes in various environments was constructed (LCPDb-ARG; lcpdb.ddg.biol.uw.edu.pl and lcpdb.ddlemb.com). Currently, this database is comprised of 607 PCR primer pairs designed for the ...
Soil-associated plasmids have the potential to transfer antibiotic resistance genes from environmental to clinical microbial strains, which is a public health concern. A specific resource is needed to aggregate the knowledge of soil plasmid characteristics so that the content, host associations, and ...
In literature, large efforts have been made to collect drug resistance related genes, and some valuable resources have been constructed. For example, the HIV drug resistance database5,6, tuberculosis drug resist- ance mutation database7, antibiotic resistance database8,9, and cancer drug ...
ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database - xinehc/args_oap
LCPDb gathers, verifies and compares properties of hundreds of primer pairs published over the years. At the moment, we present primer pairs dedicated to identification of antibiotic resistance genes (LCPDb-ARG) and genes involved in metal metabolism and resistance (LCPDb-MET). ...
Abbreviations CDC: Center for disease control and prevention; FDA: Food and drug administration; RES: Respiratory panel; TEM-PCR: Target enriched multiplex polymerase chain reaction; TRGs: Tetracycline resistance genes. Competing interests MDH, JG, LLM, SC are all full time employees of Diatherix ...
DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data. Microbiome. 2018;6:1–15. Article Google Scholar Jahan M, Mahallati MN, Amiri MB, Ehyayi H. Radiation absorption and use efficiency of sesame as affected by biofertilizers inoculation in a low ...
aureus. Such a database is valuable in staphylococcal research in light of increasing multiple-antibiotic resistance in S. aureus. SAMMD will allow scientists to study the role of individual genes in the context of global transcriptomes as well as enable comparison of new transcriptomes to ...
The discovery of new genes and proteins identified through metagenomics approaches includes the first bacteriorhodopsin of bacterial origin, novel small molecules with antimicrobial activity, and antibiotic resistance determinants. The assembly of multiple genomes in an environmental sampling, for instance, ...
(e.g., calculating the rate of agreement). For example, if the rate of agreement of the nucleotide sequence is 99.9% or higher, it can be determined that the bacteria in the sample is pan-resistantK. pneumoniae. In addition, the 16 drug resistance genes possessed by pan-resistantK. ...