This script will take a bam file mapped to the human genome hg19 and convert it to a bigwig file that could be loaded to UCSC Genome Browser. It depends on bedtools bamtobed (aka bamToBed), and it will attempt to download and execute three UCSC scripts, bedItemOverlapCount, bedGraphTo...
This is a case where the SwaggerParser from 1.0.36 works fine but the conversion to the OpenAPI with 2.0.1 fails. Clearly the dates are in an unexpected format but I expect specs that parse in Swagger 2.0 to convert to OpenApi 3. Maybe the converted model can be decorated with a warnin...
all transcripts corresponding to probe A are being found. The first step in this conversion is to find the genomic coordinates corresponding to probe A and the second step is to find all transcripts that span those coordinates. In this example transcript 2 and transcript 3 are the converted...