This script will convert bigwig files from coordinates hg18 to coordinates hg19 of the human genome. Script: checks if bigwigToBedGraph is present if not downloads it converts the bigwig to bedgraph using bigwigToBedGraph checks if liftOver is present if not downloads it lifts over the bedg...
The design of AbsIDconvert was accomplished using a preprocessing and a query step. In the preprocessing step, reference genomes were downloaded from the UCSC Genome Browser (http://hgdownload.cse.ucsc.edu/downloads.html) and the NCBI website. The sequence information for a variety of identifie...
This is a case where the SwaggerParser from 1.0.36 works fine but the conversion to the OpenAPI with 2.0.1 fails. Clearly the dates are in an unexpected format but I expect specs that parse in Swagger 2.0 to convert to OpenApi 3. Maybe the converted model can be decorated with a warnin...