#Why BIGBED (If GTF or BED file is very large to upload in UCSC, you can use trackHubs. However trackHubs do not accept either of the formats. Therefore you would need bigBed format) #First, download UCSC scripts wget http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gtfToGeneP...
Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another. - bioconvert/bioconvert
(ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_27/gencode.v27.primary_assembly.annotation.gtf.gz) from GENCODE. Per gene counts were generated using STAR -quantMode GeneCounts. Differential gene expression analysis was performed using DESeq2 with raw counts from STAR. Genes...
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