# import a converter from bioconvert.fastq2fasta import FASTQ2FASTA # Instanciate with infile/outfile names convert = FASTQ2FASTA(infile, outfile) # the conversion itself: convert() Setting up and maintaining Bioconvert has been possible thanks to users and contributors. Thanks to all: ...
"fast-deep-equal": "2.0.1", "fast-json-stable-stringify": "2.0.0", "json-schema-traverse": "0.4.1", "uri-js": "4.2.2" } }, "ansi-regex": { "version": "2.1.1", "resolved": "https://registry.npmjs.org/ansi-regex/-/ansi-regex-2.1.1.tgz", "integrity": "sha1-w7M6te...
示例1: test_get_preprocess_fastq_cmd_per_sample_FASTQ_failure ▲点赞 9▼ deftest_get_preprocess_fastq_cmd_per_sample_FASTQ_failure(self):metadata_dict = {'SKB8.640193': {'run_prefix':"sample1_failure",'primer':'A','barcode':'A','center_name':'ANL','platform':'ILLUMINA','library_c...
Using a reasonably fast laptop computer (GRIT was largely developed on a Macbook Pro with 16 GB RAM), each chromosome object can be instantiated in well under a minute or two unless the default setting to not create site primers is overridden, in which case it will take much longer. ...
[1] "Converting sam file to sorted bam file on XXX.cluster.XXX.de : /scratch/boulanger/tmp/RtmpOSr6zM/GJFV9_Drosophila_SMF_23s002742-1-1_Li_lane1NMB5_1_sequence.txt.gz_val_1.fq.gz3d3886479912f7.fastq3d3886286e5f1b.sam" [1] "Error on XXX.cluster.XXX.de processing sample /scratch...
'@nodelib/fs.scandir': 2.1.5 fastq: 1.13.0 dev: true/@types/chai-subset/1.3.3: resolution: { integrity: sha512-frBecisrNGz+F4T6bcc+NLeolfiojh5FxW2klu669+8BARtyQv2C/GkNW6FUodVe4BroGMP/wER/YDGc7rEllw==, } dependencies: '@types/chai': 4.3.3 ...
Update to use click/pyproject Dec 19, 2023 This is is therevcomppipeline from theSequanaprojet Overview:revert and complement input Fast files Input:A set of FastQ files (paired or single-end) compressed or not Output:A set of reverse completed files ...
Converts various Arx Fatalis formats (DLF, FTS, LLF, AMB and FTL) to JSON/YAML and back - arx-convert/package-lock.json at main · arx-tools/arx-convert