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Have you noticed that 'connected_component_subgraphs' is removed in 'networkx' version 2.4?Contributor Jessime commented May 30, 2020 I have; networkx is specifically pinned to avoid this problem until I get a chance to fix it. https://github.com/CalabreseLab/seekr/blob/master/setup.py#...
# 需要導入模塊: import networkx [as 別名]# 或者: from networkx importconnected_component_subgraphs[as 別名]defget_seed_scaffold():g_idx =1seed_scaffolds = {}#this stores initial long scaffoldsto_merge = set()forsubginnx.connected_component_subgraphs(G): p = []fornodeinsubg.nodes():ifs...
subprocess.call(["rm","-f",paths.tmp2_file])# compact decomposition._compact_outter(DC)forsubccinnx.weakly_connected_component_subgraphs(DC):# call recursive compaction._compact_inner(DC)# verify decomposition.forsubccinnx.weakly_connected_component_subgraphs(DC):# check its consistency._validate...