bfsu.edu.cn/anaconda/cloud/conda-forge/linux-64::openssl-1.1.1j-h7f98852done ## Package Plan ## environment location: /data/home/vip279/miniconda3/envs/r4 added / updated specs: - r-seurat The following packages will be downloaded: package | build ---|--- certifi-2020.12.5 | py39hf...
我们前两天分享了笔记:把Seurat对象里面表达量矩阵和细胞表型信息输出给CellPhoneDB做细胞通讯,就有很多小伙伴反应他安装CellPhoneDB比较困难,其实就是一个非常简单的Python模块而已,但是Python本身这个语言比较奇葩,对初学者来说各种版本冲突很膈应人,所以直接为CellPhoneDB创建一个独立的conda环境,是一个比较好的解决方案,...
复制 CRANdep<-c("Seurat","reticulate","R.utils","dplyr","ggplot2","clustree","ape","gtools","future","grid","gridExtra","magrittr","limma","patchwork","crayon","ggExtra","RColorBrewer","ggplotify","RANN","umap","celldex","curl","httr","lattice","session","shinythemes","us...
r-sessioninfo 1.2.2 r41hc72bb7e_0 conda-forge r-seurat 4.1.0 r41h03ef668_0 [] conda-forge r-seuratobject 4.0.4 r41h03ef668_0 [] conda-forge r-shadowtext 0.1.1 r41hc72bb7e_0 conda-forge r-shiny 1.7.1 r41h785f33e_0 [] conda-forge r-signac 1.7.0 r41hecf12ef_0 bioconda r...
r-seuratobject 4.1.0 r40h7525677_0 conda-forge r-shiny 1.5.0 r40h6115d3f_0 conda-forge r-sitmo 2.0.2 r40h7525677_0 conda-forge r-sourcetools 0.1.7 r40h9c3ff4c_1002 conda-forge r-sp 1.5_0 r40h06615bd_0 conda-forge r-spatial 7.3_14 r40hcfec24a_0 conda-forge ...
单细胞-SeuratR包安装第二弹安装完成 conda install -c conda-forge/label/gcc7 r-rgeos conda install -c conda-forge/label/cf201901 r-rgeos conda...install -c conda-forge/label/cf202003 r-rgeos 这是我在官网上看到的安装方式,我选择了第一个。...sudo conda install -c conda-forge r-rgeos [...
安装 查看 文章目录 1. 介绍[https://cloud.tencent.com/developer?from... PhageNanoenzyme阅读 1,867评论 0赞 0 linux学习100篇1:xshell、Xftp下载安装 1.进入Xshell官网 这里是6 现在我已经安装的是7啦 点击图中红框中的内容(Download)2.继续点击... Seurat_Satija阅读 1,542评论 0赞 7 ...
首先需要把自己的单细胞表达量矩阵和细胞分类等表型信息准备好,参考:把Seurat对象里面表达量矩阵和细胞表型信息输出给CellPhoneDB做细胞通讯 我们制作的表达量矩阵文件如下所示: > test_counts[1:4,1:4] Gene AAACATACAACCAC AAACATTGAGCTAC AAACATTGATCAGC ...
单细胞-SeuratR包安装第二弹安装完成 conda install -cconda-forge/label/gcc7 r-rgeos conda install -cconda-forge/label/cf201901 r-rgeos conda install -cconda-forge/label/cf202003 r-rgeos 这是我在官网上看到的安装方式,我选择了第一个。 sudo conda install -cconda-forger-rgeos [inu7zn786f.png...
seurat r-sf r-showtext r-slider r-sn r-sodium r-sourcetools r-spelling r-splines2 r-statnet.common r-suppdists r-svglite r-terra r-testthat r-tidygraph r-tidyverse r-tmvtnorm r-tokenizers r-traminer r-tzdb r-udunits2 r-umap r-v8 r-vcd r-vroom r-yardstick rabbitmq-server radia...