To further investigate adaptive evolution within SARS-CoV-2, we examined codon usage patterns in 3573 genomes of SARS-CoV-2 collected over the initial 4 months of the pandemic. We showed that the ENC values and the CAI values of SARS-CoV-2 were decreasing over the period. The low ENC ...
The variation of codon usage patterns in response to the evolution of organisms is an intriguing question to answer. This study investigated the relevance of the evolutionary events of vascularization and seed production with the codon usage patterns in different plant lineages. We found that the opt...
2008. Bioinformatic analysis of codon usage patterns in a free living diazotroph, Azotobacter vinelandii. Biotechnology, 7 (2): 242–249.Bioinformatic analysis of codon usage patterns in a free-living diazotroph,Azotobacter vinelandii. Sur S,Bhattacharya M,Bothra A K,Tisa L S,Sen A. Journal of...
The results showed that the overall extent of codon usage bias in Morbilliviruses is low (mean ENC = 54.8435). The good correlation between the (C+G) 12% and (G+C) 3% suggested that the mutational pressure rather than natural selection is the main factor that determines the codon usage ...
The comparison of codon usage among four edible fungi such as V. volvacea, Agaricus bisporus, Coprinopsis cinerea, and Pleurotus ostreatus indicated that the similar codon usage pattern was used among V. volvacea, A. bisporus and P. ostreatus, but there was significantly different codon usage ...
gives an overview of deviations of genetic code, factors influencing codon usage or bias, codon usage bias of nuclear and organellar genes, computational methods to determine codon usage and the significance as well as applications of codon usage analysis in biological research, with emphasis on ...
Introduction: this online codon usage calculator accept one raw sequence and calculate the outputed codon usage table according to the genetic code table you select. You can use the codon usage table to find the preferred synonymous codons according to the frequency of codons that code for the ...
An analysis of the codon usage by RTBV showed that it used many codons rarely used by its host, rice (Hull, unpublished data). The codon usage of CaMV differed between groups of the viral genes with that of genes IV–VII being closer to the optimum codon usage of Arabidopsis thaliana ...
R package for analysis and visualization of codon usage in DNA sequences.Main functionalities:calculates different measures of CU bias and CU-based predictors of gene expressivity performs gene set enrichment analysis for unannotated or KEGG/COG annotated DNA sequences implements several methods for ...
Step 2: Enter coding sequence(s) into the table. Step 3: Click "Analysis" button to view analysis result. Reference Sources Codon Usage Database - Kazusa *Expression Host Organism Choose Organism... *Copy & Paste your sequence(s) into the spreadsheet ...