Explore Topics Trending Collections Events GitHub Sponsors # codon Star Here are 23 public repositories matching this topic... Language: All Sort: Most forks Lattice-Automation / icor-codon-optimization Star 4
Codon optimization based on the mRNA folding energy and the codon frequency 一、安装 开源的工具: https://github.com/yutaka-saito/codon_optimization --cai_thsh Threshold of CAI default: 0.75 --rcc_thsh Threshold of the rare codon count default: 0 --adptw_thsh Threshold of the normalized c...
CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism. - FPPGroup/CodonBERT
codon optimization improves the translation efficiency of a target gene12by converting the DNA sequence of nucleotides of one species to that of another, such as converting human sequences to bacterial or yeast sequences, plant sequences to human sequences, and...
📈Optimizations:Comprehensive optimization framework that can target high-level Python constructs and libraries 🔋Interoperability:Full interoperability with Python's ecosystem of packages and libraries Non-goals ❌Drop-in replacement for CPython:Codon is not a drop-in replacement for CPython. There ...
Explore Topics Trending Collections Events GitHub Sponsors # codon Star Here are 27 public repositories matching this topic... Language: All Sort: Most stars Adibvafa / CodonTransformer Star 102 Code Issues Pull requests CodonTransformer: The ultimate tool for codon optimization, optimizing DNA ...
The result showed that CodonBERT can effectively capture the long-term dependencies between codons and amino acids, suggesting that it can be used as a customized training framework for specific optimization targets. AVAILABILITY AND IMPLEMENTATION. CodonBERT is freely available on https://github.com/...
(p0 + p1). There are two advanteges of this parametrization. First, this way both parameters have a predefined range(0,1). Second, there is less dependency between the two. Both properties are useful when it comes to likelihood optimization or MCMC. It goes without saying that it is ...
a demonstration of Godon usage; Godon is implementing codon model optimization written in Go tutorial evolution phylogeny codon-models Updated on May 31, 2020 F* ThibaultLatrille / NucleotideBias Star 1 Code Issues Pull requests An improved codon modeling approach for accurate estimation of th...
To ascertain whether codon optimization of klp-7 affected the TE, we performed RNA-seq and Ribo-seq from synchronized and sorted late L4 population (44 h). Indeed, we detected a twofold increase in the TE of klp-7 mRNA in the klp-7_co strain compared to WT (Fig. 6a). The TE of...