cLoops2 is an extension of our previous work, cLoops. From loop-calling based on assumption-free clustering to a full suite of analysis tools for 3D genomic interaction data, cLoops2 has been adapted specifically for data such as Hi-TrAC/Trac-looping/ChIA-PET/HiChIP, for which interactions...
Therefore, we have developed a new versatile tool named cLoops2 for the full-stack analysis of these 3D chromatin interaction data. cLoops2 consists of core modules for peak-calling, loop-calling, differentially enriched loops callingand loops annotation. It also contains multiple modules for ...
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