Reference https://htmlpreview.github.io/?https://github.com/jinworks/CellChat/blob/master/tutorial/CellChat_analysis_of_spatial_transcriptomics_data.html 承接单细胞转录组、空间转录组、scATAC-seq分析项目 扫码加群交流与学习 本站仅提供存储服务,所有内容均由用户发布,如发现有害或侵权内容,请点击举报。打开...
注意datatype 要选择 "spatial"。 4,设置参考数据库 因为空转数据是人的,这里直接选择CellChatDB.human(鼠的话选择 CellChatDB.mouse) 。 CellChatDB <- CellChatDB.human # use CellChatDB.mouse if running on mouse data# use a subset of CellChatDB for cell-cell communication analysis#CellChatDB.use <...
# use a subset of CellChatDB for cell-cell communication analysis CellChatDB.use <- subsetDB(CellChatDB, search = "Secreted Signaling") # use Secreted Signaling # use all CellChatDB for cell-cell communication analysis # CellChatDB.use <- CellChatDB # simply use the default CellChatDB # ...
factors = spatial.factors) cellchat 设置配体-受体相互作用数据库 代码语言:javascript 代码运行次数:0 运行 AI代码解释 CellChatDB <- CellChatDB.human # use CellChatDB.human if running on human data # use a subset of CellChatDB for cell-cell communication analysis CellChatDB.use <- subsetDB(...
I am following the vignette titled CellChat analysis of multiple spatial transcriptomics datasets, but I am having an issue with computeCommunProb. The issue is reminiscent of #245 (July 2021, last updated September 2022) and #300 (Octob...
The promising application of cell-cell interaction analysis in cancer From single-cell and spatial transcriptomics. Semin. Cancer Biol., (2023). Perkel, J. M. Single-cell proteomics takes centre stage. Nature 597, 580–582 (2021). Article CAS PubMed Google Scholar Jin, S., Zhang, L. &...
CellChat for systematic analysis of cell–cell communication from single-cell transcriptomics Article 16 September 2024 Detecting global and local hierarchical structures in cell-cell communication using CrossChat Article Open access 03 December 2024 InterCellar enables interactive analysis and exploration...
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics - Rename the slot `data.project` as `data.smooth` in the CellChat object · bioturing/CellChat@350853a
[2]https://htmlpreview./?https://github.com/jinworks/CellChat/blob/master/tutorial/CellChat_analysis_of_spatial_imaging_data.html [3]CellChat for systematic analysis of cell-cell communication from single-cell and spatially resolved transcriptomics ...
Reference https://htmlpreview./?https://github.com/jinworks/CellChat/blob/master/tutorial/CellChat_analysis_of_spatial_transcriptomics_data.html 承接单细胞转录组、空间转录组、scATAC-seq分析项目 扫码加群交流与学习