aThe MOP region annotations in the Allen CCF v3 (http://atlas.brain-map.org/).bThe ground truth cell types using UMAP embedding.cThe Spatial-ID prediction using UMAP embedding.dSpatial organization of the ground truth cell types in a coronal slice (slice153). Bar scale 400 μm.eSpatial...
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ggplot(data,aes(v_c,value,fill=variable))+ geom_bar(stat = 'identity',alpha=0.7)+ coord_polar(start = 11.5)+ theme_bw()+ theme(axis.text = element_blank(), legend.position = 'none', panel.border = element_blank(), plot.margin = unit(c(-3,-3,-6,-6), "cm"), panel.grid ...
The “leopard pattern” hyalinization of the seminiferous tubules is indicative of a potential spreading of the disease. The deregulated collagen deposition at the basal lamina as a feature of tissue aging added to inflammatory features and the detection of both T-cell and activated macrophages ...
Scale bar, 400 nm (left) and 200 nm (right). See also Figure S2. The transcriptional signatures of HSC-LC subsets were confirmed by mass cytometry at protein level (Figures 2E and S2D). Compared with skin LCs, HSC-LCs had a higher proportion of migLC (Figure 2F), which may be ...
(C and D)UpSet plot of intersections between the top 50 markers expressed by interferon-activated (C) and angiogenic (D) ECs from the indicated tissues. Blue bar: intersecting genes (listed in blue), commonly detected in all or the majority of the tissues containing respectively the interferon...
Although the expression of ZC3HAV1 was up-regulated by PolyI:C or Aza-CdR alone (Fig. S3D), its up-methylation but down-expression in PolyI:C plus Aza-CdR treated cells (blue bar in Fig. S3D) suggest that the anti viral function of ZAP in PK15 cells can be induced by dsRNA or ...
Scale bar, 500 μm Full size image scRNA-seq is an effective approach to gain insight into transcriptional activity in a spatial context and provides an approach to explore the process of cell fate transformation during somatic embryogenesis. We therefore used scRNA-seq to create a landscape of ...
B The bar plots depict the mean cell count of each B-cell subtype in each sample on the left. In the middle, the bar plots illustrate the proportion of each B-cell subtype in each sample. On the right, a box plot displays the proportion of B-ISG15 in each sample.; MIBC, n =...
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