A genome browser database for rice (Oryza sativa) and Chinese cabbage (Brassica rapa). Afr. J. Biotechnol., 8: 5253-5259.Kim CK, Han JH, Shin YH, Park SH, Yun DW, Ahn BO, Kim DH, Park BS, Hahn JH (2009). A genome browser database for rice (Oryza sativa) and Chinese cabbage...
The Brassica database (BRAD) was built initially to assist users applyBrassica rapaandArabidopsis thalianagenomic data efficiently to their research. However, many Brassicaceae genomes have been sequenced and released after its construction. These genomes are rich resources for comparative genomics, gene ...
The Brassicaceae knowledge-base includes the well-annotated Arabidopsis thaliana reference sequence; well-established evidence for three rounds of whole genome duplication (WGD); and the conservation of genomic structure, with 24 conserved genomic blocks (GBs). The recently released Brassica rapa draft ...
rapa genome database (http://brassicadb.org, version 1.5) using BLASTP program. The NCBI-CDD (https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi) database [26] was used to analyze the conserved domain of all non-redundant sequence. SMART (http://smart.embl-heidelberg.de/) and ...
The whole genome ofB. oleraceais available, including nine fully assembled chromosomes and 1,848 scaffolds, with 45,758 predicted genes, 13,382 transposable elements, and 3,581 non-coding RNAs. Comparative genomics information is available, including syntenic regions amongB. oleracea,Brassica rapaand...
More importantly, from a low temperature-treated whole-genome microarray data set, 19 BrMADS genes were found to show variable transcript abundance in two contrasting inbred lines of B. rapa. Among these, 13 BrMADS genes were further validated and their differential expression was monitored in ...
Mingfang Zhang, Sally Mackenzie and colleagues report the genome sequence of allopolyploid Brassica juncea and through comparative analysis suggest that A-subgenome evolution contributes to differences in agricultural subvarieties. They find that differe
BrassicaTED includes information regarding paralogous genes inB. rapaand their orthologs fromA. thaliana, obtained from theB. rapagenome database[42]. Single, duplicate, and triplicate paralogs and their orthologs inA. thalianaare listed according to the gene order inA. thaliana.The expression level...
rapa genome is approximately 4-fold larger than the Arabidopsis genome (485 Mb and125 Mb, respectively), the gene number in B. rapa is only twice that of Arabidopsis (17:9), suggesting that there was extensive gene loss during genome duplication [20, 23]. Pseudogenes are non-functional ...
All theB. rapagenome sequence data were downloaded from the Brassica database (BRAD;http://brassicadb.org/brad/)27. The protein sequences ofA. thalianatrihelix were obtained from theArabidopsisInformation Resource database (http://www.arabidopsis.org/; Supplementary TableS1). The gene information...