at the expense of generating non-standard SAM. --xeq Use '='/'X', instead of 'M,' to specify matches/mismatches in SAM record. --soft-clipped-unmapped-tlen Exclude soft-clipped bases when reporting TLEN 若我们的分享对你有用,希望您可以点赞+收藏+转发,这是对小杜最大的支持。 往期文章: ...
return xeq_; }protected:// See ALN_FLAG_PAIR_* above int pairing_;// True iff the alignment params are such that it's possible for a read to // be suppressed for being repetitive bool canMax_;// This alignment is sampled from among many alignments that, taken ...
--xeq Use '='/'X', instead of 'M', to specify matches/mismatches in SAM record --sam-append-comment Append FASTA/FASTQ comment to SAM record, where a comment is everything after the first space in the read name. --sam-opt-config <config> Use <config> to toggle SAM Optional ...
# 通过绝对路劲执行软件(不加任何参数,就会打印帮助文档) shiyanlou:bowtie2-2.4.5-linux-x86_64/ $ /home/shiyanlou/biosoft/bowtie2/bowtie2-2.4.5-linux-x86_64/bowtie2 No index, query, or output file specified! Bowtie 2 version 2.4.5 by Ben Langmead (langmea@cs.jhu.edu, www.cs.jhu....
--xeq Use '='/'X', instead of 'M,' to specify matches/mismatches in SAM record. --soft-clipped-unmapped-tlen Exclude soft-clipped bases when reporting TLEN --sam-append-comment Append FASTA/FASTQ comment to SAM record Performance: -p/--threads <int> number of alignment threads to ...