Install dependencies Option A: CreateCondaenvironment conda create -n blobtools conda activate blobtools conda install -c anaconda matplotlib docopt tqdm wget pyyaml git conda install -c bioconda pysam --update-deps Tip: Check if samtools exists by executing the command 'samtools' in the commandli...
conda create -n blobtools conda activate blobtools conda install -c anaconda -c bioconda matplotlib docopt tqdm wget pyyaml git pysam Download NCBI taxdump and create nodesdb wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz -P data/ tar zxf data/taxdump.tar.gz -C data/ no...
#blobtools安装时出现多重问题,最终重新安装wsl ubuntu22.04,conda新建python3.9的环境bkb,并且使用pip安装gcc sudo apt-get update sudo apt-get install build-essential //安装blobtools2 ,重启conda环境后可使用 blobtools BlobTools2 - assembly exploration, QC and filtering. usage: blobtools [] [<args>.....