建数据库的时候出现如题BLAST Database creation error: Error: Duplicate seq_ids are found，请问是...
提示 BLAST Database creation error: Near line 6001, the local id is too long. Its length is 51 but the maximum allowed local id length is 50. Please find and correct all local ids that are too long 同样的代码,去掉-parse_seqids 不再提示error 所以,该参数的用意,应该是规定序列id的长度。...
this program to create an alias file for aBLASTdatabase (see below). 2) Alias file creation (restricting with GI List): Creates an alias for aBLASTdatabase and a GI list which restricts this database. This is useful if one often searches a subset of a database (e.g., based on org...
Annotation of the beta-hairpin in a query sequence is performed using the BetaHairpin database. The ccPDB database holds all the variation of beta hairpins, irrespective of the length of the loop region. The module annotates the complete beta-hairpin region including the beta sheet and loop ...
The database creation needs to be done only once but it depends on what proteins db you are creating (Uniref or Uniprot_kb). If you decide to use Uniprot_kb,Annocriptwill fill an annotation table with both the BLAST results from Swiss-Prot and Trembl while if you are using Uniref, bot...
srcDB: database for finding query sequences from the blast input; destDB: database for finding subject sequences from the blast input; al, if not None, must be a writeable alignment object in which to store the alignment intervals; translateSrc=True forces creation of a TranslationDB ...
For the tests you need to have the VoltDB Voter sample database running, which you find in the VoltDB installation:$ cd voltdb/examples/voter $ ./run.sh To run the tests, in a different terminal window, in the driver root folder, type:...
NR(Non-Redundant Protein Sequence Database)非冗余蛋白库,是所有GenBank+EMBL+DDBJ+PDB中的非冗余蛋白序列。 NR数据库包含了所有物种分类的蛋白序列数据,文章时间NR数据库大约83G大小,由于注释数据运行时间时间和数据库大小几乎呈集合级增长,另外防止其他物种序列影响注释结果,因此在NR数据库建库时可以根据NCBI提供的物...
The snoRNAs, snRNAs and miRNAs were annotated using INFERNAL from the Rfam database [54]. The rRNAs were searched using RNAmmer [55]. 2.9. Repeat annotation RepeatMasker-open-4.0.7 (http://www.repeatmasker.org) was used to identify the repetitive sequences in the LTH genome. The repeat ...
(“Dearest Creature in Creation….”) TRX says: October 15, 2020 at 11:03 pm That makes a bit more sense. Reminds me of an old British book I read. The characters spent most of the book looking for “a canon with a crown.” I actually looked that up in the dictionary; it wasn...