测序完成后,必须将 BCL 文件中的测定的碱基转换为序列数据。此过程称为 BCL 到 FASTQ 的转换。 The bcl2fastq2 Conversion Software v2.18 can be used to convert BCL files from MiniSeq, MiSeq, NextSeq, and HiSeq sequening systems. For conversion of data generated on Illumina sequencing systems using...
kaijubcl2fastqfastpkronakraken2bclconvertfastq-quality-controlcontamination-screeningdisambiguate-genomes UpdatedMar 10, 2025 Python Workflow for Illumina's bcl2fastq workflowilluminabcl2fastqbase-calling UpdatedJul 15, 2024 C++ bcl2fastq by Illumina ...
此过程称为 BCL 到 FASTQ 的转换。 The bcl2fastq2 Conversion Software v2.18 can be used to convert BCL files from MiniSeq, MiSeq, NextSeq, and HiSeq sequening systems. For conversion of data generated on Illumina sequencing systems using versions of RTA earlier than RTA 1.18.54, use bcl2f...
Cellranger mkfastq 管道可用于将 BCL 文件解码为单个库的 FASTQ 文件。如果测序提供程序已经完成了这一步,则可以直接使用每个库的 FASTQ 文件进行数据分析。cellranger mkfastq的本质是调用bcl2fastq生成bcl2fastq,并生成额外的10x样本信息。Bcl2fastq是 illumina开发的bcl到fastq的转换程序。cellranger下载安装地址如下...
通过百度网盘分享的文件:bcl2fastq2-v2-20-0-linux-x86-64.zip 链接:pan.baidu.com/s/1LjleM- 提取码:0nwv 2、安装: 将软件包上传到服务器(此处以centos7.9系统为例): 软件包所在路径:/sortware cd /sortware unzip bcl2fastq2-v2-20-0-linux-x86-64.zip sudo yum localinstall bcl2fastq2-v2.20...
Documentation, product files, FAQs, and other support resources for the bcl2fastq and bcl2fastq2 Conversion Software
bcl2fastq_V219,是 illumina 官方提供的 BCL 转 FASTQ 格式的软件,这里用的版本是 v2.19。 -R参数,是下机数据所在的目录,内容如下,其中的 RunInfo.xml 文件记录了测序的一些重要信息,如总共运行了多少个循环等。 200821_M06862_0006_000000000-C9TL7 ...
bcl2fastqv1.8.3UserGuide 3 Introduction Illuminasequencinginstrumentsgenerateper-cycleBCLbasecallfilesasprimary sequencingoutput,butmanydownstreamanalysisapplicationsuseper-readFASTQ filesasinput.bcl2fastqcombinestheseper-cycleBCLfilesfromarunandtranslates
20 Part # 15038058 Rev B FASTQ Files bcl2fastq converts *.bcl files into FASTQ files, which can be used as sequence input for alignment. The files are located in the Unaligned/Project_/Sample_ directories. NOTE Reads that were identified as sample prep controls in the control files are ...
./bcl2fastq --help Congratulations!!! 【6.问题】 错误1: Error when bootstrapping CMake: Cannotfindappropriate C compiler on this system. Error when bootstrapping CMake: 解决: sudoyuminstallgcc-c++ -y 错误2: tart (child): bzip2: Cannot exec: No such file or directory ...