on which gene density is shown. Different colors represent different homoeologous chromosome pairs derived from the most recent shared WGD event.bTheKsdistribution for the medianKsof each collinear block
By accepting optional cookies, you consent to the processing of your personal data - including transfers to third parties. Some third parties are outside of the European Economic Area, with varying standards of data protection. See our privacy policy for more information on the use of your perso...
A phylogeny of Cephaloziaceae (Jungermanniopsida) based on nuclear and chloroplast DNA markers Article 07 May 2016 Nephopteris out of the clouds: Molecular evidence places the enigmatic N. maxonii (Pteridaceae) within the Jamesonia clade Article 21 October 2015 Back...
Hence, AM-related genes could potentially be identified based on the relative conservation pattern of their encoded proteins. Hierarchical clustering to identify protein phylogeny In order to identify AM-related genes in a systematic way, we first applied the clustering software Hieranoid [25] to ...
For example, at least at some stages, the standard methods select and process genes (and sites) to avoid systematic errors [11]. These problems broach a question of principle: the phylogeny based on sequence alignment needs an independent verification in order to put the fungal TOL on a more...
CPXVs were resolved into six and seven species clusters based on the phylogeny of the atip and p4c genes respectively. The CPXVs isolated from Fennoscandia were grouped into three distinct clusters that corresponded to isolates from Norway, Sweden and Finland. Conclusion CPXV is a polyphyletic ...
We first inferred the phylogeny for each of the two largest sets of loci with concordant histories according to CONCATERPILLAR. To this end, sequence alignments of all markers included in each set were concatenated. We then used concatenation of the full set of 42 loci to infer the phylogenetic...
In order to explore the potential for differential conservation of AM-related genes, we established the phylogeny of two central AM-related proteins, the GRAS-type transcription factor REQUIRED FOR ARBUSCULAR MYCORRHIZA1 (RAM1), which is an essential regulator of AM symbiosis [21], and PHOSPHATE ...
Analysis of gene co-occurrence was performed by constructing a phylogenetic tree using the ‘‘STRINGdb. The phylogeny shows the occurrence of the proteins across species. The genes encoding the proteins are listed on the top of the phylogenetic tree. The intensity of red color represents a ...
We set out to identify the origins of the Árpád Dynasty based on genome sequencing of DNA derived from the skeletal remains of Hungarian King Béla III (1172–1196) and eight additional individuals (six males, two females) originally interred at the