bamCoverage是deeptools下的一个工具,主要用于BAM转换为bigWig deeptools是基于Python开发的一套工具,用于处理诸如RNA-seq, ChIP-seq, MNase-seq, ATAC-seq等高通量数据。工具主要用途: 代码语言:javascript 代码运行次数:0 运行 -BAM和bigWig文件处理-质量控制-热图和其他描述性作图-其他 一、软件安装 使用conda安装...
BAMScaleexpands the range of data type that can be quantitatively scaled and analyzed to include OK-seq, replication timing and splice-aware RNA-seq analyses in addition to ChIP-seq/ATAC-seq, which can be analyzed by other tools as well (see Table1for a detailed comparison of data types an...
ATAC-seqChIP-seqNS-seqReplication timingReplication originsRNA-seqSLFN11Application and benchmarking of on different sequencing datasets. Scaled coverage track generation and peak quantification of ChIP-seq and ATAC-seq data. Local differential H3K27ac signal at the HOXB7 locus in MV4-11 (wild ...
deeptools是基于Python开发的一套工具,用于处理诸如RNA-seq, ChIP-seq, MNase-seq, ATAC-seq等高通量数据。工具主要用途: - BAM和bigWig文件处理 - 质量控制 - 热图和其他描述性作图 - 其他 一、软件安装 使用conda安装 conda install deeptools 二、bamCoverage的用法 安装完成以后,可以使用bamCoverage -h来查看...