The percent of all annotated ORFs detected by RNA-Seq above the indicated RPKM thresholds in both replicates of EDL933 exponential phase cultures. Full size image We next analyzed the full and sampled datasets with DESeq, a variance-analysis package that uses a model based on the negative binom...
Complex interactions between different host immune cell types can determine the outcome of pathogen infections. Advances in single cell RNA-sequencing (scRNA-seq) allow probing of these immune interactions, such as cell-type compositions, which are then interpreted by deconvolution algorithms using bulk ...
RNA-Seq Analysis To compare how TCS exposure changed bacterial gene expression, we conducted RNA-Seq analysis for the parental (Kp85anc) and one representative evolvedK. pneumoniaestrain (d10-2) in the absence and presence of TCS. Three replicates were conducted for each condition, and the dat...
利福昔明: 一种Bacterial RNAP抑制剂药物,目前全球最高研发状态为批准上市,作用机制: Bacterial RNAP抑制剂(细菌RNA聚合酶抑制剂),治疗领域: 神经系统疾病,消化系统疾病,内分泌与代谢疾病,其他疾病,感染,遗传病与畸形,血液及淋巴系统疾病,心血管疾病,在研适应症: 腹泻型
2.4. Genome-based analysis of expression profiling of MACPF genes RNA-seq data generated from the sampled different development stages (PRJNA479743), different tissues (PRJNA664867), and different PAMPs treatments (PRJNA616201) were used to examine the expression profiles of MACPF genes in R. phil...
also limited for otherZeugodacusfruit fly species, except forZ. tau49. Thus, in the present study, we used 16S ribosomal RNA (rRNA) gene sequencing with the Illumina HiSeq platform to determine the associations among various bacterial taxa in the eggs, primary ovaries, and mature ovaries ofB....
We use the following terms during the multi-strain RNA-seq analysis: study strains- strains used for the experiment that is being processed; reference strains- related, well-annotated strains used as a reference for annotation; key strain- one of reference strains which locus tags could be used...
Mutation analysis of xopAF indicates that the gene contributes to Xcaw growth in Mexican lime but does not contribute to the limited host range of Xcaw. RNA-Seq analysis was conducted to compare the expression profiles of Xcaw12879 and XccA306 in Nutrient Broth (NB) medium and XVM2 medium...
A systematic evaluation of single cell RNA-seq analysis pipelines. Nat. Commun. 10, 4667 (2019). Article PubMed PubMed Central Google Scholar Penaranda, C. & Hung, D. T. Single-cell RNA sequencing to understand host-pathogen interactions. ACS Infect. Dis. 5, 336–344 (2019). Article ...
Droplet-based high-throughput single microbe RNA sequencing by smRandom-seq. Nat. Commun. 14, 5130 (2023). Article CAS PubMed PubMed Central ADS Google Scholar Luecken, M. D. & Theis, F. J. Current best practices in single-cell RNA-seq analysis: a tutorial. Mol. Syst. Biol. 15,...