mySQL database. This transient storage has two purposes: (1) store pending submissions and (2) enable quality control of annotation and structure by the microarray curation team. Throughout the submission process, submitters are assisted and guided by the...
ArrayExpress and Expression Atlas practical: querying and exploring data at EMBL-EBIRustici, Gabriella
ArrayExpress is a new public database of microarray gene expression data at the EBI, which is a generic gene expression database designed to hold data from all microarray platforms. ArrayExpress uses the annotation standard Minimum Information About a Microarray Experiment (MIAME) and the associated ...
organisations adopting MAGE-ML standard, the volume of submissions to ArrayExpress is increasing rapidly. The database can be accessed athttp://www.ebi.ac.uk/arrayexpress. 网页版下载 第一步:进入EMBL-EBI官网:https://www.ebi.ac.uk/(或者直接进入ArrayExpress界面:https://www.ebi.ac.uk/arrayexpress...
EMBL-EBI Wellcome Trust Genome Campus, Hinxton CB10 1SD, UK Received September 22, 2004; Revised and Accepted October 1, 2004 ABSTRACT ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Informa- tion About a Microarray Experiment) requirements and stores well...
ArrayExpressis a database of functional genomics experiments that can be queried and the data downloaded. It includes gene expression data from microarray and high throughput sequencing studies. Advertisement ::DEVELOPER Brazma groupat EMBL-EBI
European Bioinformatics Institute,EMBL-EBI Wellcome Trust Genome Campus,Hinxton CB101SD,UK Received September 22,2004;Revised and Accepted October 1,2004 ABSTRACT ArrayExpress is a public repository for microarray data that supports the MIAME (Minimum Informa-tion About a Microarray Experiment)requirements...
useableforapublicrepositoryaswellasalaboratorydatabase(e.g.,asapartofLIMS)implementationof“intermediate”modelspossiblemappingtoRDBMStables-notnecessarilystraightforwardmodelsanddocumentationavailableatwww.ebi.ac.uk/arrayexpress ArrayExpress-features abletoimportMAMLformatcandealwithbothrawandprocesseddataindependenceof:...
• physical database schema •MAML data loader • populated with one dataset from EMBL • currently accessible through SQL In developmentn developmentn developmentn development • data loader-changes following MAML evolution • annotation&MAML export tool ...
EMBL Anopheles data Near future - Currently- The European Bioinformatics Institute ArrayExpress - queries The European Bioinformatics Institute EPCLUST Expression data GENOMES sequence, function, annotation SPEXS discover patterns URLMAP provide links Expression Profiler http://ep.ebi.ac.uk/ Expression data...