ARGs-OAP(v2)是一种用于从宏基因组序列中快速注释和分类抗生素抗性基因样序列的在线渠道,使用BLASTX针对SARG数据库(https://galaxyproject.org/use/args-oap/)。ARGs - OAP数据库则是整合的典范,它将 ARDB 和 CARD 的优势集于一身 。该数据库不断升级优化,v2.0 版本在 v1.0 的基础上,纳入了 NCBI - NR ...
ARGs宏基因组分析工具总结 1.ARGs-OAP(本地/在线) 地址: Galaxysmile.hku.hk/SARGs/# 输入格式:双端原始序列|双端质控序列 特点:能够计算标准化丰度(ppm、16s标准化、细胞数量标准化) 数据库:SARGv2.2(ARDB+CARD+NCBI-NR) 结果:ARGs的丰度(type、subtype)(绝对丰度相对丰度)、序列比对结果 2. DeepARG(...
There are some questions raised by users, please refer to theFAQfor details. To run ARG OAP locally, users should download the source code into local computer system (Unix/Linux). Users can upload the generated files for stage two onto our Galaxy analysis platform (http://smile.hku.hk/SA...
There are some questions raised by users, please refer to theFAQfor details. To run ARG OAP locally, users should download the source code into local computer system (Unix/Linux). Users can upload the generated files for stage two onto our Galaxy analysis platform (http://smile.hku.hk/SA...
There are some questions raised by users, please refer to theFAQfor details. To run ARG OAP locally, users should download the source code into local computer system (Unix/Linux). Users can upload the generated files for stage two onto our Galaxy analysis platform (http://smile.hku.hk/SA...