In recent years, genetic and molecular studies have shed new light on the intricate regulatory network involving these regulators and their interactions with other factors such as LEC1, PICKLE, ABI5 or WRI1, as well as with sugar and hormonal signaling. Here, we summarize the most recent ...
A regulatory hierarchy of developmental switches has been proposed, although the full complement of regulators remains unknown. Here we present a protein–DNA network between Arabidopsis thaliana transcription factors and secondary cell wall metabolic genes with gene expression regulated by a series of ...
A regulatory hierarchy of developmental switches has been proposed, although the full complement of regulators remains unknown. Here we present a protein-DNA network between Arabidopsis thaliana transcription factors and secondary cell wall metabolic genes with gene expression regulated by a series of ...
, sheet 1) were used to intersect with the 800-bp regulatory window of each gene. A gene is defined as a strong MED12-interacting gene if there is a >40% overlap between the 800-bp regulatory window and the MED12 ChIP-seq peaks. Two biological replicates of MED12 ChIP-seq data were...
Gene regulatory network (GRN) analysis can be used to better understand the functions of lncRNAs, as it has been used extensively to decipher gene functions (Statello et al., 2020; Zhao et al., 2022). One such analytical tool is ncFANs, which was constructed on the basis of this concept...
Starch serves as a temporal storage of carbohydrates in plant leaves during day/night cycles. To study transcriptional regulatory modules of this dynamic metabolic process, we conducted gene regulation network analysis based on small-sample inference of
gene, a protein or a metabolite, and an edge (or link) indicates the interaction between these two biomolecules. Such interactions could be physical interactions, metabolite flow, regulatory relationships, co-expression relationships,etc. [1]. One important property of networks is the modular ...
As a result, computational approaches using coexpression network to predict gene function, such as in [40], will undoubtedly have limitations. Putative regulatory elements underlying seed storage reserve accumulation To gain insight into possible relationships in gene coexpression and regulation, we ...
the molecular factors controlling SE induction that have been addressed in Arabidopsis revealed a complex regulatory network in which the transcription factors (TFs), microRNAs (miRNAs), and epigenetic modifications interact to erase the existing cell identity and switch on the embryogenic pathway of ...
V. et al. XAANTAL2 (AGL14) is an important component of the complex gene regulatory network that underlies Arabidopsis shoot apical meristem transitions. Mol Plant 8, 796–813 (2015). Google Scholar Brady, S. M. et al. A high-resolution root spatiotemporal map reveals dominant expression...