Computer science Antimicrobial peptide editable database UNIVERSITY OF RHODE ISLAND Joan PeckhamLenore M. Martin KonstantinidisGeorgeA combined DB and software tool that was used for years by research scientists as a resource for peptide analysis, was Peptide Companion and it was written for Windows ...
系统标签: peptide apd antimicrobial database peptides hydrophobic APD:theAntimicrobialPeptideDatabase ZheWangandGuangshunWang* EppleyInstituteforResearchinCancerandAlliedDiseases,UniversityofNebraskaMedicalCenter, 986805NebraskaMedicalCenter,Omaha,NE68198-6805,USA ReceivedAugust11,2003;RevisedAugust20,2003;Accepted...
c Peptides Database Synthetic Antibiotic Peptides DatabaseSynthetic Antibiotic Peptides Databasesynthetic antibiotic peptides, Antimicrobial Sequences Database (AMSDb), Peptaibol Database, SWISS-PROT proteinA computerized database for synthetic antibiotic peptides, the SAPD, has been created and is ...
ANTIMIC: a database of antimicrobial sequences." Nucleic Acids Res 32(Database issue): D586‐9 - Brahmachary, Krishnan, et al. - 2004 () Citation Context ...he scientific community working in the area of peptide based cancer therapeutics. Although many peptide databases, e.g. MHCBN [23...
An antimicrobial peptide database (APD) has been established based on an extensive literature search. It contains detailed information for 525 peptides (498 antibacterial, 155 antifungal, 28 antiviral and 18 antitumor). APD provides interactive interfaces for peptide query, prediction and design. It ...
Herein, we demonstrate the initial development of a bioinformatics approach for the identification and characterization of putative AMPs based on peptide homology. For this, we used a manually curated AMP sequence database to search the rich genomic resources that we have built for the North American...
Cationic host defence peptides (CHDP), also known as antimicrobial peptides, are naturally occurring peptides that can combat infections through their direct microbicidal properties and/or by influencing the host’s immune responses. The unique ability of CHDP to control infections as well as resolve...
The antimicrobial peptide database (APD,http://aps.unmc.edu/AP/) is an original database initially online in 2003. The APD2 (2009 version) has been regularly updated and further expanded into the APD3. This database currently focuses on natural antimicrobial peptides (AMPs) with defined sequ...
The average length of all AMPs in the Antimicrobial Peptide Database (APD) is 33.19 amino acids4 (database accessed in February 2022). The vast majority of AMPs have a positive net charge and are composed of a mix of hydrophobic and hydrophilic groups that fold into an amphipathic ...
Considering this, we developed a comprehensive user-friendly data repository of antimicrobial peptides (DRAMP), which holds 17349 antimicrobial sequences, including 4571 general AMPs, 12704 patented sequences and 74 peptides in drug development. Entries in the database have detailed annotations, ...