AlgoLab/malvaPublic NotificationsYou must be signed in to change notification settings Fork4 Star10 master Branches 9Tags Code README GPL-3.0 license MALVA: genotyping by Mapping-free ALternate-allele detection of known VAriants Alignment-free genotyping of a set of known variants (in VCF format) ...
altRows.add(newTableRow().set("alternate_bases", v.getAlternateBases(j))); }// Count each allele present in the cohort.for(String cohort : cohortMap.keySet()) { HashMultiset<Integer> genotypeCount = HashMultiset.create();for(VariantCall call : v.getCallsList()) {if(cohort.equals(ALL_...
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