Advancing RNA-Seq analysisNature Biotechnology 28, 421 (2010). doi:10.1038/nbt0510-421Authors: Brian J Haas & Michael C ZodyNew methods for analyzing RNA-Seq data enable de novo rec ...doi:10.1038/nbt0510-421Br
Total RNA was isolated from chondrocytes co-cultured with GMOCS-Exos, and subsequent RNA-seq analysis identified TGFB1 as the most upregulated gene in these chondrocytes (Fig. 11A). Fig. 11 TGFB1 is a key gene regulating the Nrf2 signaling pathway in GMOCS-Exos-treated chondrocytes. Note(A...
Application of bulk segregant RNA-Seq (BSR-Seq) and allele-specific primers to study soybean powdery mildew resistance Cheng-Chun Huang Chen-Hsiang Lin Hao-Xun Chang BMC Plant Biology(2024) Comprehensive mapping and modelling of the rice regulome landscape unveils the regulatory architecture underlying...
the host institution of another LongTREC Fellow, Fabian. It’s a great pleasure to have the opportunity to learn how a bioinformatics company works and how it supports scientific research by providing user-friendly end-to-end data analysis software, OmicsBox. Various lrRNA-seq analysis tools are...
QC serves as the initial step in the scRNA-seq analysis pipeline, aiming not only to eliminate low-quality data that may interfere with downstream analysis but also to exclude non-biological factors introduced by experimental conditions such as RNA degradation, elevated mitochondrial gene rates, and...
leading to resistance. To understand this process at a transcriptional level, single-cell RNA sequencing (scRNA-seq) was performed for the first two patients who showed this switch. The analysis showed an enrichment in the TNF-alpha signaling pathway during disease progression, supporting...
QC serves as the initial step in the scRNA-seq analysis pipeline, aiming not only to eliminate low-quality data that may interfere with downstream analysis but also to exclude non-biological factors introduced by experimental conditions such as RNA degradation, elevated mitochondrial gene rates, and...
Single-cell RNA-seq analysis reveals the progression of human osteoarthritis. Ann Rheum Dis. 2019;78(1):100–10. 29. Li PH, Kong XY, He YZ, Liu Y, Peng X, Li ZH, et al. Recent developments in application of single-cell RNA sequencing in the tumour immune microenvironment and ...
scBERT as a large-scale pretrained deep language model for cell type annotation of single-cell RNA-seq data Nat Mach Intell, 4 (2022), pp. 852-866, 10.1038/s42256-022-00534-z View in ScopusGoogle Scholar 36 P. Charoenkwan, C. Nantasenamat, M.M. Hasan, B. Manavalan, W. Shoombu...
Analysis Open access 07 February 2025 Article: 128 Development of a prognostic model based on four genes related to exhausted CD8+ T cell in triple-negative breast cancer patients: a comprehensive analysis integrating scRNA-seq and bulk RNA-seq Yulin Shi Yang Yu Changgang Sun Analysis Open ...