技术标签:blastpNCBI NCBI推出blastp加速服务(Accelerated protein-protein BLAST) 很多时候会用到NCBI在线blastp的nr库,随着nr库越来越大,速度也越来越慢。这不在今年5月份的时候推出了blastp加速工具。使用非常简单,blastp页面中在Program Selection一项中选择Quick BLASTP(见下图)。现在已经是默认选项。... ...
CLUS_GPU-BLASTP: accelerated protein sequence alignment using GPU-enabled cluster. The Journal of Supercomputing, pp: 1-16.Rani, Sita and O.P. Gupta, 2017. CLUS_GPU-BLASTP: accelerated protein sequence alignment using GPU-enabled cluster. The Journal of Supercomputing,pp: 1-16....
NCBI BLASTP is a popular sequence analysis tool used to study the evolutionary relationship between two protein sequences. Protein databases continue to grow exponentially as entire genomes of organisms are sequenced, making sequence analysis a computationally demanding task. For example, a search of ...
Protein clustering of up to tens of billions of proteins Frameshift alignments for long read analysis. Low resource requirements and suitable for running on standard desktops or laptops. Various output formats, including BLAST pairwise, tabular and XML, as well as taxonomic classification. ...
including BLAST-based20,35and deep learning-based36,37methods. Outside of the domain of antibiotic resistance, there have been multiple attempts to discover biological knowledge from knowledge graphs38,39,40,41,42by formulating it as a knowledge graph completion (KGC)43problem, where the objective...
Evolution of novel traits is a challenging subject in biological research. Several snake lineages developed elaborate venom systems to deliver complex protein mixtures for prey capture. To understand mechanisms involved in snake venom evolution, we decod
A large number of sensitive homology searches are required for mapping DNA sequence fragments to known protein sequences in public and private databases during metagenomic analysis. BLAST is currently used for this purpose, but its calculation speed is insufficient, especially for analyzing the large ...
HMMER3 is substantially more sensitive and 100- to 1000-fold faster than HMMER2. HMMER3 is now about as fast as BLAST for protein searches. INSET: Author Summary. 展开 DOI: 10.1371/journal.pcbi.1002195 被引量: 2459 年份: 2011 收藏 引用 批量引用 报错 分享 ...
SF3B1mutation causes multiple alterations in mRNA processing. The use of alternative 3′ or 5′ splice site produces transcripts containing short intronic sequences that are degraded by the non-sense mediated decay (NMD) or are translated into a variant protein9,10,11. These splicing changes driv...
In naïve mice, cyanocobalamin treatment enhanced the expression of fibronectin type 3 domain-containing protein (P < 0.01) and serine/threonine transporter SstT (P < 0.05), along with favoring numerous notable genes: type 2 toxin-antitoxin system HicB family antitoxin, flagellin domain protein,...