In a preliminary step, we used the state of the art data-integration and clustering methods to integrate our human molecular data: Similarity network fusion (SNF)39fuses together networks by using a diffusion process that enhances the patterns shared by different datasets. However, on our data, ...
41 (see Supplementary Data S1). Figure 1a shows the binary response tree of our IRTree model. The nodes correspond to the sequential choices (responses) leading to one of five behavioural categories (= five symbols). Node 1 encodes the participation in a given trial (‘yes’, 1; ‘no...
scRNA-seq data analysis tools and papers Single-cell RNA-seq related tools and genomics data analysis resources. Tools are sorted by publication date, reviews and most recent publications on top. Unpublished tools are listed at the end of each section. Please, contribute and get in touch! See...
In this work, the initial signal width was derived from the data acquired in vacuum and in LXe, and the signal in the cathode is deconvolved with the detector and electronics responses. Initial asymmetry in the charge distribution given by the lamp’s pulse. The effect in the width of the...
specified command and wraps it in the user-specified gadget chain, then serializes these objects to stdout. When an application with the required gadgets on the classpath unsafely deserializes this data, the chain will automatically be invoked and cause the command to be executed on the ...
These data suggest that within a given cell line, a single D-type cyclin in combination with CDK4 or 6 is required to mediate passage through the restriction point. Hence, greater therapeutic specificity might be achieved through the disruption of specific D-type cyclin-CDK4/6 interactions. ...
Experimental techniques such as DNA microarray, serial analysis of gene expression (SAGE) and mass spectrometry proteomics, among others, are generating large amounts of data related to genes and proteins at different levels. As in any other experimental
snfServer native format fonts are another version of X11 bitmap font. See the entry for PCF files, above, for more information.styStyle files are used by LaTeX to define the layout of a LaTeX document (by redefining the meaning of commands like \section, for example). They are also used...
Furthermore, our data imply that although other cBAF complex subunits contain IDRs, they do not confer self-interaction properties sufficient for condensation, at least in this cellular system. Beyond cBAF, additional subunits within the mSWI/SNF family contain IDRs, suggesting, by extension, that...
Given the importance of NCCs in neurocristopathy-type syndromes, we performed gene set enrichment analysis against the KEGG pathway database using total cell RNA-seq data from two independent clones of patient-derived and gene-edited mutant NCCs. Compared to control cells, we found that focal ...