3.安装Trim Galore TrimGalore: A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data 3.1. 源代码下载:https://github.com/FelixKrueger/TrimGalore 查看安装日志:Installation: Trim Galore!is a a Perl wrapper around...
1. 安装命令 mamba install trim-galore 2.报错 image.png 3.既然缺少,那就安装cutadapt, mamba insatall cutadapt 继续报错 image.png 4.查看下现在环境的python版本, mamba list image.png 5.python版本3.9.1,不对,那就安装个对的版本。requires python >3.8,<3.9. 0,指定3.8 mamba insatall python=3.8 ...
mv TrimGalore-0.4.5/trim_galore /usr/bin 大概是说安装这个软件上之前需要安装Fastqc和cutadapt两个软件,Fastqc 使用conda 就可以安装。 3. cutadapt下载源代码:https://github.com/marcelm/cutadapt 安装: git clone https://github.com/marcelm/cutadapt/ cd cutadapt python setup.py build_ext -i 需要下载...
Trim Galore是自动检测转录组数据adapter的质控软件。cutadapt软件可以对NGS数据进行质量过滤,FastQC软件可以查看NGS数据的质量分布,trim_galore将这两个软件封装到一起,使用起来更加的方便。 安装 conda install trim-galore 使用 trim_galore -q 20 --phred33 --stringency 3 --length 20 -e 0.1 \ --paired $di...
安装 (rnaseq)root11:58:44~$ conda install-y trim-galoretrim-galoreCollectingpackage metadata(current_repodata.json):doneSolvingenvironment:done==>WARNING:Anewer version of conda exists.<==current version:4.9.2latest version:4.10.1Pleaseupdate conda by running ...