安装 (rnaseq)root11:58:44~$ conda install-y trim-galoretrim-galoreCollectingpackage metadata(current_repodata.json):doneSolvingenvironment:done==>WARNING:Anewer version of conda exists.<==current version:4.9.2latest version:4.10.1Pleaseupdate conda by running $ conda update-n base-c defaults c...
3.安装Trim Galore TrimGalore: A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data 3.1. 源代码下载:https://github.com/FelixKrueger/TrimGalore 查看安装日志:Installation: Trim Galore!is a a Perl wrapper around...
cutadapt软件可以对NGS数据进行质量过滤,FastQC软件可以查看NGS数据的质量分布,trim_galore将这两个软件封装到一起,使用起来更加的方便。 安装 conda install trim-galore 使用 trim_galore -q 20 --phred33 --stringency 3 --length 20 -e 0.1 \ --paired $dir/cmp/01raw_data/$fq1 $dir/cmp/01raw_data/...
5.python版本3.9.1,不对,那就安装个对的版本。requires python >3.8,<3.9. 0,指定3.8 mamba insatall python=3.8 6.然后再次安装, mamba insatall cutadapt mamba install trim-galore image.png 成功 7.查看下帮助文档 image.png
ref:GitHub - FelixKrueger/TrimGalore: A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data # 下载出现问题/很慢: 使用wget -c # 添加环境变量 # 使用: ...