Create KEGG.db Package Query online KEGG annotation to generate KEGG.db package that can be used by clusterProfiler and other packages. ✍️ Authors Guangchuang YU and Ziru Chen ⏬ Installation ## install.packages("remotes")remotes::install_github("YuLab-SMU/createKEGGdb") ...
URL 'https://rest.kegg.jp/link/hsa/pathway': status was 'SSL connect error' I also tried options(clusterProfiler.download.method = xx):xx=auto... but it dose not work. in additon, I also try createKEGGdb: library(createKEGGdb) species...
I can't install KEGG.db.> remotes::install_github('YuLab-SMU/createKEGGdb') Downloading GitHub repo YuLab-SMU/createKEGGdb@HEAD Skipping 1 packages not available: clusterProfiler -- R CMD build --- v checking for file 'C:\Users\hoffnungslos\AppData\Local\Temp\RtmpCAhIOd\remotes2c5464656...
remotes::install_github("YuLab-SMU/clusterProfiler") Establish a local KEGG database # install the packages remotes::install_github("YuLab-SMU/createKEGGdb") # import the library and create a KEGG database locally library(createKEGGdb) species <-c("ath","hsa","mmu", "rno","dre","dm...
Error installing latest version of DOSEYuLab-SMU/DOSE#69 About using compareCluster result to plot the treeplot, I cannot repeat the result. And here is the error that looks like: > treeplot(test.out, showCategory = 10, geneClusterPanel= "pie", nWords=0, cex_category=0.5, offset_tipla...