Oral infection with cysts is the main transmission route of Toxoplasma gondii (T. gondii), which leads to lethal intestinal inflammation. It has been widely recognized that T. gondii infection alters the composition and metabolism of the gut microbiota,
3D Annotation Icon Camera Animation Point Annotation Bubble PetalMaps Intents for Android Service Introduction Nearby Place Search Keyword Search Route Planning Navigation POI Details JavaScript Service Introduction Version Change History Function Overview Function Experience Getting Start...
The NGSEP commands Annotate, FilterVCF, and VCFDistanceMatrixCalculator were used respectively to perform functional annotation of variants, filtering and construction of distance matrices. The un-rooted dendrogram shown in Fig.5was built using the neighbour joining algorithm from a distance matrix calcu...
67,68, open chromatin30and others, as demonstrated with single-cell ATAC-seq data here. The functional annotations presented will also aid in targeted manipulation of genomic elements. For example, our high-resolution promoter annotation will aid reagent...
We contributed to the annotation of the newly sequenced bovine genome by experimentally confirming the in vivo expression of 4,313 electronically predicted proteins (see additional file 1). We also identified 10.6% and 9.8% 'hypothetical' (i.e. proteins predicted from nucleic acid sequences and ...
Additional file 1: Human neurodegenerative disorders characterized by the presence of the α-synuclein deposits. (DOC 24 KB) Rights and permissions This article is published under license to BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attrib...
GO annotation was carried out using BLAST2GO software (Figures 1D, 2B). A total of 42% of unigenes were annotated after the BLAST2GO annotation procedure for High Scoring Pair (HSP) coverage of 0%. While we kept the unigenes/GO dataset corresponding to the minimum HSP coverage percentage...
Finally, similar results were obtained even when the spatial domain number was set to 3, demonstrating the strong robustness and high sensitivity of SpaDo to detect TLS-like spatial domain (Additional file 1: Fig. S10). SpaDo enables reference-based spatial domain annotation The annotation of ...
Please cite:Musacchia F, Basu S, Petrosino G, Salvemini M, Sanges R. Annocript: a flexible pipeline for the annotation of transcriptomes which can also identify putative long non-coding RNA To start using it you must follow instructions in theGUIDEfolder. Below is a simple introduction of wh...
Single (i) Cell R package (iCellR) is an interactive R package to work with high-throughput single cell sequencing technologies (i.e scRNA-seq, scVDJ-seq, scATAC-seq, CITE-Seq and Spatial Transcriptomics (ST)). - rezakj/iCellR