Watch one of our videos or check out one of our written tutorials to learn more about whole genome sequence analysis and whole exome sequencing analysis.Exome Analysis Tutorial See how to align exome resequencing data from all major NGS platforms against a reference sequence with unsurpassed ease...
基因组sequencinggenomeanalysis分析基因 METHODOLOGY ARTI CLE Open Access Whole genome sequencing analysis of Plasmodium vivax using whole genome capture A Taylor Bright 1,2* , Ryan Tewhey 3,4 , Shira Abeles 5 , Raul Chuquiyauri 5,6 , Alejandro Llanos-Cuentas 6 , Marcelo U Ferreira 7 , Nichol...
Whole Genome Sequencing AnalysisRui YinChee Keong KwohJie ZhengEncyclopedia of Bioinformatics and Computational Biology
Objectives: The objectives of this study were to identify antimicrobial resistance genotypes for Campylobacter and to evaluate the correlation between resistance phenotypes and genotypes using in vitro antimicrobial susceptibility testing and whole-genome sequencing (WGS). Methods: One hundred-fourteen Campylob...
Using whole-genome next-generation sequencing (NGS), researchers at the Central European Institute of Technology at Masaryk University in the Czech Republic—in collaboration with the EMBL Genomics Core Facility, Heidelberg,...
-genome sequencing, and genotypes have been called for each individual for each site in the genome using a standard pipeline. The data has been filtered to retain onlybi-allelicsingle nucleotide polymorphisms (SNPs), and these have been furtherthinnedto reduce the file size for this tutorial....
Exome sequencing is a targeted sequencing approach that is restricted to the protein-coding regions of genomes. The exome is estimated to encompass approximately 1% of the genome, yet contains approximately 85% of disease-causing mutations [1]. For genetic r...
However, despite the important properties of this mushroom, there is little whole genome information for R. griseocarnosa, limiting mechanistic analysis. Here, we present the whole genome de novo sequencing of R. griseocarnosa. The recent availability of several genome sequences of published fungi...
We wonder if the notion of WGS needs clarification when used in discussions with patients. Although each donated DNA sample may have full genome sequencing, it is important for the clinician to explain that only specific segments of the genome, pertaining to the clinical phenotype, will be analyz...
Genome annotation Multi-Locus Sequence Typing (MLST, optional) Antibiotic resistance genes screening Virulence genes screening Pangenome comparison (optional) When working withEscherichia,KlebsiellaorSalmonellasequencing data, extensive analysis can be enabled (by using the-g/--generaoption), including: ...