同时,用户可利用新开发的GeneHub工具,在WheatOmics网站对小麦单基因的多组学数据一键获取。 图1A. WheatOmics数据和工具总览文章提出,随着小麦多组学大数据的井喷式发展和WheatOmics等在线数据库的建立,小麦功能基因组学研究已经进入到更关注小麦特色基因的阶段。以植物氮素吸收关键基因NRT2.1为例,文章报道了一个利用Wheat...
We assessed the overall population genetic structure of 308 hexaploid accessions using neighbor joining (NJ) phylogenetic tree, PCA, and ADMIXTURE v1.3.070for non-hierarchical, quantitative clustering analyses. For all these analyses, we used a non-redundant SNP data set obtained after removing rare...
Considering the total number of genotypes for each genotyping platform (GBS and WGS) asnand the total number of filtered markers asp, SNP-matrices can be represented asM = (msi), with 1 ≤ i ≤ nand 1 ≤ s ≤ p. Given 1 ≤ j ≤ n, the Rogers’ dis...
Considering the total number of genotypes for each genotyping platform (GBS and WGS) asnand the total number of filtered markers asp, SNP-matrices can be represented asM = (msi), with 1 ≤ i ≤ nand 1 ≤ s ≤ p. Given 1 ≤ j ≤ n, the Rogers’ dis...
Ecogeographic distribution of 137 diverseAe. tauschiiaccessions. AMap shows the geographic locations and the ancestry coefficients of 137 accessions. Twenty-one accessions used to develop theAe. tauschii-wheat introgression population are shown in blue.BVenn diagram showing the proportions of SNP variance...
Additional SNP markers for fine-mapping were identified after the sequencing of flow-sorted chromosome 3A. By mapping the reads against both the bread wheat reference genome and cv. Kronos assembly, the authors identified SNPs in non-coding regions within the YES-1 region, which enabled fine-...
little is known about the genetic foundation underlying salinity tolerance at the seedling growth stage of wheat. Herein, a GWAS analysis was carried out by the random-SNP-effect mixed linear model (mrMLM) multi-locus model to uncover candidate genes responsible for salt tolerance at the seedling...
From this network, a network associated with QTL regions and composed of hub genes was extracted. Using Plink (v1.9), SNP information was extracted from genotype files for the promoters and intragenic regions of these genes. The significance (p < 0.01) of differences in phenotypes (SL, GNS,...
Hub genes are very important nodes, because they often encode indispensable proteins39–41. Generally, hubs represent a small proportion of the genes in a GCN, but with relatively high information exchange with other nodes. The connectivity distributions of all nodes were examined in each GCN (...
Bateman A, Martin MJ, O’Donovan C, Magrane M, Apweiler R, Alpi E et al (2015) UniProt: a hub for protein information. Nucleic Acids Res 43:D204–D212 Google Scholar Beemster GTS, Masle J (1996) Effects of soil resistance to root penetration on leaf expansion in wheat (L.): com...