Cell Ranger is a set of analysis pipelines that process Chromium Next GEM single cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more (see list of exampleworkflowsandsupported libraries). Cell Ranger includes five pipelines relevant to...
What is Cell Ranger? Cell Ranger is a set of analysis pipelines that process Chromium single cell data to align reads, generate feature-barcode matrices, perform clustering and other secondary analysis, and more (see list of exampleworkflowsandsupported libraries). Cell Ranger includes five ...
Loupe Browser is a desktop application for Windows and MacOS that allows you to quickly and easily visualize and analyze 10x Genomics Chromium™ Next GEM Single Cell Multiome ATAC + Gene Expression (GEX) data. It combines the tools previously developed for looking atSingle Cell Gene Ex...
Illumina Connected SoftwareIllumina.comIllumina Support More Illumina Connected SoftwareIllumina.comIllumina Support Ask or SearchCtrl + K Illumina Knowledge What's New Announcements Cloud Status Instrumentation General iSeq 100
Link to this page: Facebook Twitter Complete English Grammar Rules is now available in paperback and eBook formats. Make it yours today! Advertisement. Bad banner? Pleaselet us knowRemove Ads
Loupe Browser is a desktop application for Windows and MacOS that allows you to quickly and easily visualize and analyze Chromium™ Next Gem Single Cell ATAC data. It is optimized for finding significant peaks and distinguishing transcription factor motifs, identifying cell types, comparing chromatin...
In this example you have onesamplethat is processed through oneGEM well(a set of partitioned cells from a single 10x Chromium™ Chip channel) and sequenced on oneflowcell. In this case you would generate FASTQs usingcellranger mkfastq, and runcellranger countas described inSingle-Sample Anal...
Loupe Browser (previously named Loupe Cell Browser) is a desktop application that provides interactive visualization functionality to analyze data from different 10x Genomics solutions. Loupe Browser allows for easy interrogation of different views of your 10x Genomics data to gain insights into the ...