Visual Molecular Dynamics 开发者名称: Open Source 最新版本: 1.9.3 软件类别: 教育性 软件子类别: 科学 操作系统: Windows, Mac, Linux软件概述VMD是用于显示,动画,和分析使用3- d图形和内置脚本大生物分子系统的分子可视化程序。软件网站 开发者网站 ...
ELSEVIER VMD: Visual Molecular Dynamics William Humphrey, Andrew Dalke, and Klaus Schulten Theoretical Biophysics Group, University of Illinois and Beckman Institute, Urbana, Illinois 61801 VMD is a molecular graphics program designed for the display and analysis of molecular assemblies, in particular ...
VIAMD is an interactive analysis tool for molecular dynamics (MD) written in C/C++. VIAMD is developed in collaboration with the Department for Media and Information Technology (LIU, Norrköping) and the PDC Center for High Performance Computing (KTH, Stockholm). It exposes a rudementary scrip...
Often lost in the controversy is the fact that genes do not directly code for behaviors per se but, rather, code for molecular processes that act on neurons and neural systems, which, in turn, function as the intermediaries of genetic effects on complex behaviors. In the case of LIMK1, ...
A carbon nanotube model (length: 7.8704 nm; diameter: 2.711 nm) was built using Visual Molecular Dynamics (VMD) software. Then, the obtained nanotube was placed in a rectangle box with dimensions of 8 × 8 × 7.8704 nm3. The nanotube was placed in the center of the box with it...
Source data are provided as a Source Data file. Full size image We found that for direct VPNs, especially in the case of medulla VPNs but also to a certain extent for aMe and lobula VPNs, the neurons that have the largest receptive fields are the ones that are the most strongly ...
Furthermore, with the ability to dissect detailed circuit dynamics of neural populations using the rich genetic tools in flies, we are poised to gain a deeper understanding of how sensory information is transformed into more abstract representations, which is fundamental to and essential for higher ...
Our data indicate that astrocyte Ca2+ dynamics in rodent cortex are governed by multiple interacting mechanisms. Locomotion-induced responses likely reflect widespread activation of noradrenergic inputs from LC that follow changes in arousal [7, 9]. In contrast, the retinotopically organized visual res...
Infiltration of neutrophil and T cells in the retina was also observed following rTBI, and this response was blocked by anti-CCL20 antibody treatment (Add- itional file 1: Figure S1). This needs further investiga- tion to establish the immune cell response in the retina following rTBI. In ...
Molecular space visualization can help to explore the diversity of large heterogeneous chemical data, which ultimately may increase the understanding of structure-activity relationships (SAR) in drug discovery projects. Visual SAR analysis can therefore