#option 1 (default): look at both SNV and INDEL concordance $ python3 ${VCFCompare}/src/python/VCFCompare.py \ example/gatk_variants.vcf \ example/bcftools_variants.vcf \ --out test $ ls test.* test.csv #option 2 (optional): look at either SNV or INDEL concordance $ python3 ${VCF...
We developed SCI-VCF, a Shiny-based comprehensive analysis utility to summarize, compare, inspect, analyse and design interactive visualizations of the genetic variants from the variant call format. With an intuitive graphical user interface, SCI-VCF aims to bridge the approa...
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