VCFCompare A Python program for evaluating site-level concordance of a query VCF against a truth VCF. The summary metric CSV file contains: Variant type: SNV or INDEL Total number of variants in the truth and query VCF files Total true-positive, false-positive, and false-negative calls ...
We developed SCI-VCF, a Shiny-based comprehensive analysis utility to summarize, compare, inspect, analyse and design interactive visualizations of the genetic variants from the variant call format. With an intuitive graphical user interface, SCI-VCF aims to bridge the approachability gap in genomics...