Using geneid to identify genes. Current Protocols in Bioinformatics. 2007;18(1):Unit 4.3.Blanco E, Parra G, Guigo R. Using geneid to identify genes. In: Baxevanis AD, et al. (eds). Curr Protoc Bioinformatics. Hoboken, NJ: John Wiley & Sons, Inc. 2007, Chapter 4: Unit 4.3....
Using geneid to identify genes. Curr. Protoc. Bioinformatics Chapter4, Unit 4.3 (2007). PubMed Google Scholar Wang, E. T. et al. Alternative isoform regulation in human tissue transcriptomes. Nature 456, 470–476 (2008). Article ADS CAS Google Scholar Shapiro, I. M. et al. An EMT...
With the explosion of data comes a proportional opportunity to identify novel knowledge with the potential for application in targeted therapies. In spite of this huge amounts of data, the solutions to treating complex disease is elusive. One reason being that these diseases are driven by a netwo...
To further explore the gene regulation of floral reversion in switchgrass, the transcriptome of reversed, unreversed, and uncultured immature inflorescences were analyzed and 517 genes were identified as participating in flower reversion. Annotation using non-redundant databases revealed that these genes ...
In particular, these methods need to overcome the computational challenge of integrating over a million cells and create adjusted gene expression matrix for all genes for downstream analysis. To this end, we present scMerge2, a scalable, high-capacity algorithm that allows data integration of atlas...
Immune response assay to detect low expression genes For mouse studies: Sequencing assays to interrogate CDR3 for TCR beta and for BCR IgH, enabling deeper insights in repertoire analysis. Request a quote Additionally, factors like gene expression and microbiota influence the immune ...
Identification of key pathways and genes in colorectal cancer using bioinformatics analysis 来自 Semantic Scholar 喜欢 0 阅读量: 525 作者:B Liang,C Li,J Zhao 摘要: Colorectal cancer (CRC) is the most common malignant tumor of digestive system. The aim of this study was to identify gene ...
From the negative binomial over gene counts, we can derive a p value for each gene in a sample and thus identify a set of significant DEGs. We first focus on analyzing breast cancer (BC) and calculating the enrichment of known cancer driver genes and subtype marker genes among the set of...
Functional annotation of open reading frames in microbial genomes remains substantially incomplete. Enzymes constitute the most prevalent functional gene class in microbial genomes and can be described by their specific catalytic functions using the Enzy
The purpose of our experiment was to identify genes that specifically regulate subcutaneous and intramuscular fat in pig with extreme backfat and IMF. Interestingly, some of the DEGs and DAPs identified in the backfat groups in this study. For instance, UBD expression was upregulated in our HBF...