Students use the fractions 1/10, 1/2, 1/4, and 3/4; the decimals 0.1, 0.5, 0.25, and 0.75; and the percents 50%, 25%, 75%, 100%, and the multiples of 10% as benchmarks with which to describe and compare all part-whole relationships....
Real-world metagenomic data benchmarking pipeline.ASamples from three different biomes were size fraction filtered through 0.22 μm filters to obtain microbial- (> 0.22 μm) and viral-enriched fractions (< 0.22 μm).BDNase treatment was performed in viral-enriched fractions to remove free DN...
The latter represents the total integrated area of both positive and negative contributions to the signal. To compare the performance of the on-chip flow cytometer with a commercial tool, the biological sample is first characterized on our benchmark flow cytometer (CytoFLEX). Figure 5a shows the ...
To objectively compare data processing and quantitation methods, the proteomics community often employs so-called ‘spike-in benchmark datasets’, where peptides with known properties (e.g., sequence and concentration) are added to ‘background’ peptides with likewise known properties. To mimic the...
c“Jawbreaker” plots combine evolutionary cluster information with the cluster CCFs to create a summary of the fractions of cancer cell populations present in each sampled location at the time of radical prostatectomy. Example jawbreaker plot at the top in gray describes how descending subclonal ...
To investigate the effect of the fiber volume fraction of the composites within the hole on the structural response of the stitched sandwich panel, preforms stitched with 12 k and 24 k carbon fibers were considered, as well as a non-stitched panel as a benchmark. After stitching, the Vacuum...
We found that the PCR-free method demonstrated the best quantification of clonotype abundances (RMSE= 0.09;R2= 0.95), whileNextSeq 500(RMSE= 0.15;R2= 0.64) andONT(RMSE= 0.14;R2= 0.8) measured the clonotype frequencies poorly, especially at higher fractions (Fig.6c). Notably, the ability to...
The focus of the presented analyses was the evaluation of the impact of differently gen- erated spectral libraries on one DIA data set, not to bench- mark different MS technologies or tools on the same sample respectively data set, as was for example done in (35). In the latter Navarro ...
across four HCC sections to benchmark the performance of all methods. A higher Spearman rank correlation suggests that the estimated latent time is more consistent with the true transitions. Source data are provided as a Source Data file.eEstimated latent time heatmap for SDEvelo in tumor-...
where n = number of density fractions, and k = number of samples. Wilcoxon signed-rank test Wilcoxon signed-rank, another non-parametric test utilized to compare two related or matched samples138, can be employed to assess the statistical significance of the models134,135. The Wilcoxon...