Overlap analysis identified orthologous genes which were significantly up or down-regulated under herbivory compared to 0 h at any time point in both species. Out of the total 1,192 DEGs identified under insect herbivory in ‘GREM4’ and ‘PN40024’, 911 had orthologs in both genomes. Of th...
The G domain, previously identified as having similarity to the GTP-binding domain of prokaryotic IF-2 [3], was conserved highly among the homologous gene products (an average of 65% identity with the sequences encoded by PfMB2). Dever et al. [13] identified three motifs, GXXXXGK, DXXG...
In Prokaryotic Antimicrobial Peptides: from genes to applications (eds Djamel, Drider & Sylvie, Rebuffat) Ch. 4, 55–72 (Springer New York, 2011). 8. Severinov, K., Semenova, E., Kazakov, A., Kazakov, T. & Gelfand, M. S. Low-molecular-weight post-translationally modified microc...
Unique prokaryotic consortia in geochemically distinct sediments from Red Sea Atlantis II and Discovery Deep brine pools. Plos One 2012;7:e42872.Siam R, Mustafa GA, Sharaf H, Moustafa A, Ramadan AR, Antunes A, et al. Unique prokaryotic consortia in geochemically distinct sediments from Red ...
Plant genomes contain a high proportion of duplicated genes as a result of numerous whole, segmental and local duplications. These duplications lead up to the formation of gene families, which are the usual material for many evolutionary studies. However
In the present study, plasmid pAC3 isolated from a highly fluoroquinolone-resistant isolate of Aeromonas species was sequenced and found to contain two fluoroquinolone resistance genes, aac(6′)-Ib-cr and qnrS2. Comparative analyses of plasmid pAC3 and other Aeromonas sp. IncU-type plasmids ...
In the context of prokaryotic genome evolu- tion driven by gene gain and loss over long periods, the gene content of a pangenome that comprises phylogenetically related bacterial species reflects a record of responses to natural selection26. Core genes shared by all species in a pangenome are ...
The ciliate host and the green algal endosymbiont genomes harbor genes for fermentation The endosymbiotic Chlorella sp. most probably has the capacity to photosynthesize oxygenically and respire aerobically as its free-living relatives do. However, this endosymbiotic green alg...
Among type E strains, a total of 8 such subtypes (E1-E8) have been identified [11]. These subtypes differ at the amino acid level by up to 6%. The genes encoding BoNT/A-G are found in toxin gene clusters that also encode several nontoxic proteins and regulatory proteins. The gene ...
and number of genes.cA gene-sharing network of viral sequences between vMAGs from this study and prokaryotic virus genomes in the GenBank database. Nodes represent individual genomes, and edges indicate similarity among genomes within a viral cluster.dNumber of vMAGs identified using different tools...