TxDb/org.Hs.eg.db 使用方法 "TxDb.Hsapiens.UCSC.hg19.knownGene"library#orgHsegdb数据对象里面包含着各大主流数据库的数据,一般人都比较熟悉的entrezID和ensembl 数据库的ID。library("org.Hs.eg.db")txdb<-TxDb.Hsapiens.UCSC.hg19.knownGene gene=genes(txdb)#提取23056个基因信息,数据以Grangs格式显示。 e...
> txdb <- TxDb.Hsapiens.UCSC.hg19.knownGene > txdb TxDb object: | Db type: TxDb | Supporting package: GenomicFeatures | Data source: UCSC | Genome: hg19 | Organism: Homo sapiens | UCSC Table: knownGene | Resource URL: http://genome.ucsc.edu/ | Type of Gene ID: Entrez Gene ID | Fu...
Depends R (> = 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,FunciSNP.data = 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,FunciSNP.data]]>plyr, org.Hs.eg.db, snpStats, ggplot2 (>= 0.9.0), reshape (> = 0.8.4), scales Enhances parallel Description FunciSNP integrates in...